Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01361 ATGTTCGCCGCCTTGCGTCTCCTTCTTCTTCTCTCACTCTTCTCACCACTCACCAATGCCCAAACCAACGACGAGCGTGAAATTCTTCTCACCCTAAAATCCTCCCTCGGGAAATCAAATCCCAAACTCTTGGACACGTGGAATGCCACCAATTCAGTATGCACCTTCGGCGGCGTCACCTGCAACTCCCTCCTTTCGGTCACCGAAATCGACCTCTCCAACCAGTCCCTCTCCGGGGTTCTCCCCTTCCACTCGCTCTGCAACCTTCCATCGCTCCAAAAACTGGCCTTGGGCTTCAACAACTTAAACGGCAACGTTTCAGAGGATTTAAGAAACTGCGTCAAGTTACGCTACTTGGACTTGGGAAACAACCTTTTCTCGGGTCCCTTTCCTGACATATCTCCGCTCAACCAACTGCAGCATCTTTTCCTAAACAAAAGTGGATTTTCGGGGACTTTCCCGTGGCAGTCGCTGTTAAACATGACGGATTCTCTGTTACAGTTAAGCGTCGGAGACAACCCTCTGGACTTCACGCCGTTTCCCAAAGAGGTTGTGAGTCTCAAGAATTTGAATTGGCTCTACCTATCCAACTGCACCCTCGGAGGGAAACTTCCGGTGGGACTCGGCAACCTCACGGAGCTAACGGAATTGGAATTCTCCGATAATTTCATCACCGGCGACTTCCCCGCGGAGATTGTCAACCTTCGCAAGCTCTGGCAGCTTGAATTCTTCAATAACTCCTTCACTGGAAAGATTCCAACTGGCTTGAGAAACCTCACCAGACTTGAGAATTTGGACGGGTCAATGAATAAGCTCGAAGGGGATCTCTCTGAGTTGAAGTACTTAACCAATATAGTTTCCTTGCAATTCTTCGAGAACAACTTGTCGGGGCAGATTCCTATTGAGATAGGCGAGTTCAAACGCCTCACGGCTTTTTCTCTGTACAGGAACAGGTTAACGGGTCCTATTCCTCAGAAAATTGGTTCCTGGTCGGAGTTTGACTACATCGACGTGTCGGAGAATTTTCTGACAGGGAGGATCCCGCCGGAGATGTGCAAAAGGGGGAAGATGTCCGCGCTGCTCGTCCTTCAGAACAACCTCTCCGGTGAGATTCCGGCCACCTACGGAGACTGTTTGAGTCTGAAGCGATTCAGAGTGAGCAACAACTCGCTCTCGGGAACCGTGCCTCCAACGGTTTGGGGATTGCCAAACGCGGAAATAATCGATATCGAGCTGAATCAGTTGGAAGGTTCGATCACTTGGGATATCAAAAACGCGAAAACGCTGGCAACAATATTCGGCCGGAAGAACCGGTTGGCCGGTGAATTACCTGAAGAAATCTCAAAAGCGACATCGTTAGTGAGTGTGGATTTAAGCGAGAATCAAATTTCGGGGAAGATTCCAGAAGGGATAGGCGAGCTTAAAGAACTAGGTAGCCTTCATTTACAGAGCAATAAATTAACAGGTTCGATACCGGAATCTCTAGGTTCCTGTAAATCACTAAACGACATTGACCTGTCGAGGAATTCACTCTCTGGTAAAATCCCCTCCTCGTTGGGTTCTTTCCCCGCTCTGAATTCTCTCAACCTCTCAGAGAATCTTCTCTCAGGCGAAATCCCGGCAAGTTTAGCGTACCTCAGGTTAAGCCTCTTTGATTTATCCAACAACCGGTTAACCGGTCCAATTCCGCAGGCTCTAACACTAGAAGCTTACAACGGAAGCCTCTCTGGAAACCCTAATTTATGCAGCGTGGACGCAATTAGCTACTTCAAACGTTGCTCTGCTTCCTCAGGCATGTCCAAGGACATGCGCGCACTCCTCATTTGCTTCGCTGTAGCGTTGATGCTGTTGCTCTCTTGTCTCGCAGTTTACTTACAGTTAAAGAGGAGAAGAGAGGAGGGTGAGAAAAGATACGGGGAACGTTCTCTGAAGGAGGAATCATGGGACGTGAAATCGTTCCACGTGTTGAGTTTCTCCGAAGGGGAGATTCTAGATTCCATCAAGCAGGAGAATCTGATAGGTTCGGGAGGCTCGGGGAACGTGTACAGAGTCACGCTTTCCAATGGAAAAGAACTCGCAGTGAAGCATATCTGGAACAGCGACTTCCCCGCGAGGAGAAAATCGTGGAGCAGCACTCCCATGCTGAAGCGTGGCAAGTTGAAGGAGTTCGACGCCGAGGTGCAGGCATTGAGCTCCATTAGGCACGTGAATGTTGTGAAGCTCTATTGCAGCATAACAAGCGAGGATTCGAGTTTGTTGGTGTACGAGTATTTGCCCAATGGAAGCTTGTGGGACCGGCTTCACACCAGTCGGAAAATGGAACTTGATTGGGAAACACGATACGAAATTGCGGTCGGTGCAGCCAAAGGGTTGGAGTATTTGCATCATGGGTGTGAAAGGCCAGTTATTCATAGGGATGTCAAATCGAGTAACATATTGTTGGACGAGTTTCTCAAACCTAGGATTGCGGATTTCGGTCTTGCTAAGGTTGTTCAATCCAACGTTGGGAAAGATTCTTCTAGTCATGTCATTGCTGGAACTCACGGCTACATAGCTCCTGAATATGGATACACATACAAGGTGAATGAGAAGAGTGATGTCTATAGTTTTGGAGTGGTGTTGATGGAGTTGGTGACTGGGAAGAGGCCAATGGAACCGGAATTTGGGGAAAATAAGGATATAGTGAGTTGGGTGCATAACAAGGCACGGAGCAAAGAGGGGCTTAGGAGTGTCGTAGATTCGAGAATTCCGGAGATGTATAAAGAGGAAGCTTGCAAGGTGTTGAGAACTGCAGTTTTGTGCACGGGGACTCTTCCAGCTTTGAGACCCACCATGAGAGCAGTGGTTCAAAAACTTGAGGATGCTGAGCCTTGTAAATTGGTTGGGATTGTTATTAGCAGTGAAAAGAAAAGTGGGGTCAACGACAAATAA 2931 0.4828 MFAALRLLLLLSLFSPLTNAQTNDEREILLTLKSSLGKSNPKLLDTWNATNSVCTFGGVTCNSLLSVTEIDLSNQSLSGVLPFHSLCNLPSLQKLALGFNNLNGNVSEDLRNCVKLRYLDLGNNLFSGPFPDISPLNQLQHLFLNKSGFSGTFPWQSLLNMTDSLLQLSVGDNPLDFTPFPKEVVSLKNLNWLYLSNCTLGGKLPVGLGNLTELTELEFSDNFITGDFPAEIVNLRKLWQLEFFNNSFTGKIPTGLRNLTRLENLDGSMNKLEGDLSELKYLTNIVSLQFFENNLSGQIPIEIGEFKRLTAFSLYRNRLTGPIPQKIGSWSEFDYIDVSENFLTGRIPPEMCKRGKMSALLVLQNNLSGEIPATYGDCLSLKRFRVSNNSLSGTVPPTVWGLPNAEIIDIELNQLEGSITWDIKNAKTLATIFGRKNRLAGELPEEISKATSLVSVDLSENQISGKIPEGIGELKELGSLHLQSNKLTGSIPESLGSCKSLNDIDLSRNSLSGKIPSSLGSFPALNSLNLSENLLSGEIPASLAYLRLSLFDLSNNRLTGPIPQALTLEAYNGSLSGNPNLCSVDAISYFKRCSASSGMSKDMRALLICFAVALMLLLSCLAVYLQLKRRREEGEKRYGERSLKEESWDVKSFHVLSFSEGEILDSIKQENLIGSGGSGNVYRVTLSNGKELAVKHIWNSDFPARRKSWSSTPMLKRGKLKEFDAEVQALSSIRHVNVVKLYCSITSEDSSLLVYEYLPNGSLWDRLHTSRKMELDWETRYEIAVGAAKGLEYLHHGCERPVIHRDVKSSNILLDEFLKPRIADFGLAKVVQSNVGKDSSSHVIAGTHGYIAPEYGYTYKVNEKSDVYSFGVVLMELVTGKRPMEPEFGENKDIVSWVHNKARSKEGLRSVVDSRIPEMYKEEACKVLRTAVLCTGTLPALRPTMRAVVQKLEDAEPCKLVGIVISSEKKSGVNDK 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01361 976 ProSitePatterns Serine/Threonine protein kinases active-site signature. 802 814 IPR008271 GO:0004672|GO:0006468
Cca03g01361 976 SUPERFAMILY L domain-like 270 591 - -
Cca03g01361 976 SUPERFAMILY L domain-like 57 327 - -
Cca03g01361 976 Pfam Leucine rich repeat 476 535 IPR001611 GO:0005515
Cca03g01361 976 Gene3D Transferase(Phosphotransferase) domain 1 758 961 - -
Cca03g01361 976 Pfam Protein kinase domain 669 950 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01361 976 ProSiteProfiles Protein kinase domain profile. 667 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01361 976 Gene3D Ribonuclease Inhibitor 134 358 IPR032675 -
Cca03g01361 976 PANTHER RECEPTOR-LIKE PROTEIN KINASE 7 5 964 - -
Cca03g01361 976 Gene3D Ribonuclease Inhibitor 23 133 IPR032675 -
Cca03g01361 976 Gene3D Phosphorylase Kinase; domain 1 650 757 - -
Cca03g01361 976 Pfam Leucine rich repeat N-terminal domain 23 62 IPR013210 -
Cca03g01361 976 ProSitePatterns Protein kinases ATP-binding region signature. 673 695 IPR017441 GO:0005524
Cca03g01361 976 SMART serkin_6 667 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01361 976 SUPERFAMILY Protein kinase-like (PK-like) 658 952 IPR011009 -
Cca03g01361 976 Gene3D Ribonuclease Inhibitor 359 591 IPR032675 -
Cca03g01361 976 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 5 964 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01361 Cca-Chr3 31719211 31722915 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01361 1 975 Receptor kinase-like Gene Family AT1G09970 60.387 0.0 1148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca03g01361 Pkinase 1.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01361 - - gmx:100779554 1679.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01361 03 31719211 31722915 Cca03g01361 03 31719211 31722915 ECH