Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01359 ATGGCGAATCCCGAAACCCAACGTCACCGCACACGCCGAAACCGCCGCTCCAAACCCCGGCCGCCGGCGGGAAAGGATAGGGTTCCGCTGAAGCTGCTGCTGCGGGTGGCGTCGGTTGCCGGTGGCATTCAGTTTGGCTGGGCCCTGCAGCTCTCTCTTCTCACGCCCTACGTGCAGCAGCTCGGGATCCCGCACGTGTGGGCCAGCATCATATGGCTCTGTGGGCCTCTCTCTGGGCTCCTCGTCCAGCCCCTTGTGGGCCACTTGAGCGACCGCTGCACCAGCCGCTTCGGCCGCCGGAGGCCCTTTATTTTGGGCGGAGCATTGGCGATCATCGTCTCTGTTCTAATCATCGGTCACTCCGCCGACATTGGGTGGTGGTTCGGCGACACCACCAAACATCGCCCCTGGGCTGTGGGCGTTTTTATTTTCGGCTTTTGGATTTTGGACGTCGCTAACAACGTCACTCAGGGCCCTTGTAGAGCTTTGCTTGGTGATCTCACTTGCAAGGATCATCGAAGGACACGTGTTGCAAATTCTTATTTCTCCTTGTTTATGGCTATTGGTAATATTCTTGGATACGCTACTGGCTCATATAGTGGCTGGTACAGGGTCTTTACTTTTGCACTTACCCCGGCATGCAATATTAGTTGTGCAAATCTCAAGTCTGCTTTCTATCTCGACGTTGTTTTCATTGTTGTCACCACCTATATCAGCATTGTGTCAGCTCATGAAGTGCCCTTAAGTTCAAGTGGGGCACAACAAGTTGAAGAAGCAACAGGGGAATCAGGTGCTGCAGGAGAAGCTTTCCTGTGGGAGCTATTTGGGACTTTCAGATATTTTTCAACCCCTGTATGGACAATACTATCTGTTACTGCTCTAACATGGATTGGTTGGTTTCCATTTCTCCTATTTGATACTGATTGGATGGGCCGAGAAATTTATGGTGGTGAGCCAAATGAAGGCCCTAATTATGATGCTGGAGTTAGAATGGGGGCGGTTGGCTTATTGCTTAATTCAGTTGTTCTTGGAGTAACATCAGTACTCATGGAGAGGCTTTGCAGAAAGCGGGGGCCTGGGTTTGTGTGGGGAATCTCAAATATCCTAATGGCTGTCTGCTTTGTTGCAATGCTTGTTGTAACCTATGTGGCAAATTACATTGGCTATGTAGGCAAAGATCTACCACCAACTGGCATTGTGATAGCTGCATTGATAATCTTTACCATTCTTGGGTTTCCACTTGCAATCACTTACAGCGTTCCATATGCCTTGATTTCCACTCATATTCAGTCATTGGGGCTTGGTCAAGGATTGTCAATGGGAGTCCTAAATCTTGCAATAGTGATCCCACAGATGGTGGTGTCCTTGGGAAGTGGACCATGGGATCAGCTATTTGGTGGAGGAAATACTCCAGCCTTTGGTGTGGCAGCTGTTGCAGCCCTTGTCAGTGGATTCATAGCTGTCTTGGCTATTCCCCAATCTGGTGGTCAAAAGCCTAGAAGCCAAGTATGA 1512 0.5 MANPETQRHRTRRNRRSKPRPPAGKDRVPLKLLLRVASVAGGIQFGWALQLSLLTPYVQQLGIPHVWASIIWLCGPLSGLLVQPLVGHLSDRCTSRFGRRRPFILGGALAIIVSVLIIGHSADIGWWFGDTTKHRPWAVGVFIFGFWILDVANNVTQGPCRALLGDLTCKDHRRTRVANSYFSLFMAIGNILGYATGSYSGWYRVFTFALTPACNISCANLKSAFYLDVVFIVVTTYISIVSAHEVPLSSSGAQQVEEATGESGAAGEAFLWELFGTFRYFSTPVWTILSVTALTWIGWFPFLLFDTDWMGREIYGGEPNEGPNYDAGVRMGAVGLLLNSVVLGVTSVLMERLCRKRGPGFVWGISNILMAVCFVAMLVVTYVANYIGYVGKDLPPTGIVIAALIIFTILGFPLAITYSVPYALISTHIQSLGLGQGLSMGVLNLAIVIPQMVVSLGSGPWDQLFGGGNTPAFGVAAVAALVSGFIAVLAIPQSGGQKPRSQV 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01359 503 Gene3D MFS general substrate transporter like domains 31 490 IPR036259 -
Cca03g01359 503 MobiDBLite consensus disorder prediction 1 26 - -
Cca03g01359 503 PANTHER SUCROSE/H+ SYMPORTER, PLANT, MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN-RELATED 6 501 - -
Cca03g01359 503 SUPERFAMILY MFS general substrate transporter 33 495 IPR036259 -
Cca03g01359 503 CDD MFS_SLC45_SUC 33 489 - -
Cca03g01359 503 PANTHER SUGAR TRANSPORTER 6 501 - -
Cca03g01359 503 TIGRFAM GPH_sucrose: sucrose/H+ symporter 28 494 IPR005989 GO:0005887|GO:0008515|GO:0015770
Cca03g01359 503 Pfam MFS/sugar transport protein 48 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01359 Cca-Chr3 31686518 31696156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01359 5 499 Sucrose Transporter Gene Family AT1G09960 68.317 0.0 687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01359 K15378 - gmx:100787939 878.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01359 03 31686518 31696156 Cca03g01359 03 31686518 31696156 ECH