Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01346 ATGTCTCCACCAGTGCTGAGCATAGGGGAGGAGGAGGGTAAAAGCAATGTCACTCTGTTGGTTTCCTCAACCACCATGGAAAGTGTGTCTCTCAAGAGCTTAGAATTAAAAGAGCGCAACTACATGGGATTATCTGATTGTTCTTCTGTGGACAGCTCTGTTCCGTCCTTCTCAGAAGAGAGTAAAAGTAATCTGAACCTGAAAGCAACTGAACTCAGGCTCGGGCTTCCTGGATCACAGTCTCCTGAAAGGGATTCTGATCTTTGCTTAAGAAGCTCGACTCAATTTGATGAAAAACCGTTGTTTCCTTTGCGTCCTTTGACTGATGATCACCATTCTTCAGCCAAGACTGCTGTTCTTGGAAACAAAAGAGGGTTCTCGGATGCCATGAACGGCTTCTCAGAGGGGAAATTCCTAGCTAATCCGGAGGCCAATCCAATACTATCTCCAAGGCCTGCTTCAAACTTGGGATTAAAACCTGGTTCTACCCCTGAGAAGGTTGGGGCTCAGCAAACCAAAATGAAAGAAGTAACAACAACAAATGTTGTGCTTGATAGGCCTCTTGCTGCCAATGAAAATAGACCAAATCTTGATGGTTCTGCAAACAATAATAGCAGTGCACCAGCTACCAAGGCTCAGGTTGTGGGGTGGCCTCCTATAAGATCATTCAGGAAGATTTCATTGGCAACTAATTCAAAGAGCACTGAAGAAGTTGATGGAAAAGTGGGGGTTGGTGCACTGTTCATCAAGGTCAGTATGGATGGTGCTCCCTATTTAAGGAAAGTAGACTTGAAGAATTACTCTACATATCCAGAATTATCTTCTGCTCTAGAAAAGATGTTCAGCTGTTTTACTATAAGTCAATGTGGATCTCATGGAATTCTGGGCAGGGAGATGCTGAATGAAACCAAGTTGAAAGACCTTCTTCATGGATCAGAATATGTTCTTACATACGAGGACAAAGATGGCGATTGGATGCTTGTGGGTGATGTTCCCTGGGAGATGTTTATTGAAACTTGCAAGAGGCTAAGGATCATGAAGAGTTCTGATGCCATTGGTCTAGCTCCCAGGGCTGTTGAAAAAAGCAGGACCAGGAACTAA 1101 0.4396 MSPPVLSIGEEEGKSNVTLLVSSTTMESVSLKSLELKERNYMGLSDCSSVDSSVPSFSEESKSNLNLKATELRLGLPGSQSPERDSDLCLRSSTQFDEKPLFPLRPLTDDHHSSAKTAVLGNKRGFSDAMNGFSEGKFLANPEANPILSPRPASNLGLKPGSTPEKVGAQQTKMKEVTTTNVVLDRPLAANENRPNLDGSANNNSSAPATKAQVVGWPPIRSFRKISLATNSKSTEEVDGKVGVGALFIKVSMDGAPYLRKVDLKNYSTYPELSSALEKMFSCFTISQCGSHGILGREMLNETKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIETCKRLRIMKSSDAIGLAPRAVEKSRTRN 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01346 366 ProSiteProfiles PB1 domain profile. 246 348 IPR000270 GO:0005515
Cca03g01346 366 SUPERFAMILY CAD & PB1 domains 246 347 - -
Cca03g01346 366 MobiDBLite consensus disorder prediction 195 211 - -
Cca03g01346 366 Pfam AUX/IAA family 70 357 IPR033389 -
Cca03g01346 366 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 17 360 IPR003311 GO:0005634|GO:0006355
Cca03g01346 366 MobiDBLite consensus disorder prediction 189 212 - -
Cca03g01346 366 PANTHER AUXIN-INDUCED PROTEIN 17 360 - -
Cca03g01346 366 Gene3D - 241 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01346 Cca-Chr3 31509291 31515140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01346 249 351 B3 DNA Binding Superfamily AT2G46530 34.951 3.28e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Cca03g01346 AUX_IAA 7e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01346 K14484 - gmx:100783314 600.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01346 03 31509291 31515140 Cca03g01346 03 31509291 31515140 ECH