Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01342 ATGGTGGTGAGAAAAGTGGGGAAGTACGAGATTGGGAGGACGATTGGGGAGGGAACCTTTGCGAAGGTGAAGTTCGCTCAGAACACAGAAACCGGCGAGAGCGTGGCCATGAAGGTGCTCGACCGTAGCACCATCATCAAGCACAAGATGGTCGAACAGATCAAGAGGGAGATTTCCATTATGAAGCTCGTTAGGCATCCTTATGTTGTCCGCCTTCACGAGGTTCTAGCTAGCCGGACTAAGATTTATATCATATTGGAGTTCATCACGGGTGGTGAATTGTTTGATAAAATTATACACCATGGACGTCTCAGTGAAGCTGATTCTAGAAGATATTTCCAACAGCTTATTGATGGTGTAGATTATTGCCACAGCAAGGGAGTTTATCACAGAGATTTAAAGCCTGAAAATCTTTTACTCGATTCACTAGGAAATATAAAGATTTCAGATTTTGGTTTGAGTGCATTGCCTGAACAGGGGGTGAGCATCCTTCGAACAACTTGTGGGACTCCAAACTATGTTGCTCCTGAGGTACTCAGTCATAAGGGTTACAACGGTGCTGTTGCAGATGTTTGGTCCTGTGGGGTTATCCTATATGTCCTACTGGCTGGATATCTTCCCTTTGATGAGCTTGATCTAACCACCTTATATAGTAAGATTGAGAAAGCAGAGTTTTCATGCCCTCCTTGGTTTCCTGTGGGGGCAAAAGCGTTGATACACAGAATTTTGGACCCAAATCCTGAAACCCGAATAACCATTGAGCAGATAAGAAATGACGAATGGTTTCAGAGGAGCTATGTTCCTGTCAGTCTTCTCGAGTATGAAGATGTAAATCTTGATGATGTAAATGCTGCTTTTGATGATGCGGAGGAACAAAGGGCTGATCAACAATGTGATAATGAGGACATGGGTCCTTTAATGCTTAATGCATTTGACTTGCTAATTCTGTCTCAAGGCTTAAATCTTGCAACAATCTTTGATCGCGGGCAGGACTCTGTGAAGCACCAAACCCGATTTATTTCTCAAAAGCCAGCAAAGGTGGTTTTATCAAGTATGGAAGTCGTGGCACAATCAATGGGATTTAAGACACATATTCGTAACTACAAGATGAGGGTAGAGGGTATTTCAGCAAATAAAGCATCCTATTTCTCGGTCATTCTGGAAATTTTTGAAGTGGCTCCTACATTTTATATGGTGGACATTCAAAAAGCAGCTGGAGATACTGGCGAATACCTCAAGTTTTACAAGAACTTTTGTAGCAATCTGGAGGATATAATCTGGAAACCGCCTCATGAAGCAAGTAAATCAAGGATCTCCAAGACCAAAAGCAAAAGACGATAG 1341 0.4251 MVVRKVGKYEIGRTIGEGTFAKVKFAQNTETGESVAMKVLDRSTIIKHKMVEQIKREISIMKLVRHPYVVRLHEVLASRTKIYIILEFITGGELFDKIIHHGRLSEADSRRYFQQLIDGVDYCHSKGVYHRDLKPENLLLDSLGNIKISDFGLSALPEQGVSILRTTCGTPNYVAPEVLSHKGYNGAVADVWSCGVILYVLLAGYLPFDELDLTTLYSKIEKAEFSCPPWFPVGAKALIHRILDPNPETRITIEQIRNDEWFQRSYVPVSLLEYEDVNLDDVNAAFDDAEEQRADQQCDNEDMGPLMLNAFDLLILSQGLNLATIFDRGQDSVKHQTRFISQKPAKVVLSSMEVVAQSMGFKTHIRNYKMRVEGISANKASYFSVILEIFEVAPTFYMVDIQKAAGDTGEYLKFYKNFCSNLEDIIWKPPHEASKSRISKTKSKRR 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01342 446 Gene3D Phosphorylase Kinase; domain 1 2 88 - -
Cca03g01342 446 Pfam NAF domain 305 363 IPR004041 GO:0007165
Cca03g01342 446 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 2 443 - -
Cca03g01342 446 PANTHER - 2 443 - -
Cca03g01342 446 Gene3D Transferase(Phosphotransferase) domain 1 89 270 - -
Cca03g01342 446 ProSitePatterns Protein kinases ATP-binding region signature. 15 47 IPR017441 GO:0005524
Cca03g01342 446 CDD CIPK_C 309 424 - -
Cca03g01342 446 ProSiteProfiles NAF domain profile. 303 327 IPR018451 GO:0007165
Cca03g01342 446 SUPERFAMILY Protein kinase-like (PK-like) 6 277 IPR011009 -
Cca03g01342 446 ProSiteProfiles Protein kinase domain profile. 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01342 446 Coils Coil 279 299 - -
Cca03g01342 446 SMART serkin_6 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01342 446 Pfam Protein kinase domain 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01342 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Cca03g01342 446 Gene3D Kinase associated domain 1, KA1 302 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01342 Cca-Chr3 31413759 31419983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01342 1 388 CBL-interacting serine-threonine protein kinases AT4G24400 83.505 0.0 682
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Cca03g01342 Pkinase 3.3e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01342 - - gmx:100785444 850.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01342 03 31413759 31419983 Cca03g01342 03 31413759 31419983 ECH