Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01336 ATGTCCGCCACTGGGGTACACTTGCACATCCAAGATCATCATGTGGTGATGGATAATGGCATAGTCCAAGTTACCTTATCAAATCCGGATGGAATTGTCACTGGGATACGATATAATGGTGTAGACAATTTGCTTGAAGTCCTCAACAAGGAGACTAATAGAGGGTACTGGGACCTTGTTTGGAGTGCGCCAGGAAGCAAAGGAATGTTTGATGTGATTAAAGGAACACATTTTAAAGTTATAGTTCAAAATGAGGAACAGTTGGAGCTTTCATTTACAAGAATGTGGGATCATTCTCTAGAGGGAAAGTTTGTCCCCTTAAATATTGACAAAAGATTCATATTGCTCCGTGGTTCATCAGGCTTCTACTCTTATGGAATTTATGAGCACTTAAATGGATGGCCAGATTTTGATCTTGGTGAAACAAGGATCACTTTCAAGCTTAGAAAAGACAAGTTTCAATACATGGCTATGGCAGACAATAGAAGAAGGGTTTTGCCTTATCCAGAAGATCGGATGCCAGGAAGATGCCAAACCTTGGCCTACCCAGAAGCTGTCCTACTAGTCAATCCCAAGGATCCGCAATTGAAAGGAGAGGTGGATGACAAGTATCAGTATTCATGTATAAATTTTGATAATCGAGTCCATGGGTGGATATCTTTCAATCCACCAGTAGGATTCTGGCAGATCACACCTAGTGATGAGTTTCGTTCTGGTGGACCCCTCAAACAGAATTTGACCTCACACGTAGGCCCCACCACACTTGCAATGTTTCTTAGTGGTCACTATTGCGGACAAGATTTGGTGCCTAAATTTAGAGGTGGTGAACCATGGAAGAAGGTTTTTGGTCCTGTATATATTTATCTTAATTCTGGAGCAGTTGGTGATGACCCACATTGGCTATGGGAGGATGCAAAAATACAGATGATGAATGAAGTTCAAAGTTGGCCATATAGTTTCCCAGCTTCGGAGGATTTTTTAAAATCAGATCAACGGGGCTATGTCAGTGGCAGATTACTTGTCTTGGACAGGTACATCTGCACAGACTTGATATCAGCAAATGGTGCTTATGTTGGTCTGGCCCCACCTGGAGATGCAGGGTCATGGCAAAGAGAATGCAAGGACTATCAATTCTGGACCAGAGCAGATGAGAATGGATTTTTTACTATTAGAAATGTACGTCCAGGCGACTATAACCTTTTTGCTTGGGTACCTGGTTTTGTTGGGGACTACAAATTTGGTGATTTTGTGAAGATAACATCAGGTTCTTGCAATGAATTGGGTGAGATTGTATATGAGCCTCCAAGGGATGGTCCCACATTGTGGGAAATAGGTATTCCTGATAGATCAGCTGCAAAATTCTATGTTCCTGATCCCAATCCACAACATATTAATAAGCTTTTTATCAACCATCCAGACAGGTTCAGGCAGTATGGATTGTGGGACAGGTATACAGAATTGTATCCTGATGGGGATTTGGTTTACACAATTGGAATTAGTGACTATAGGAAGGATTGGTTTTATGCACAGGTTCCCAGAAAAAAAGAAGATAACACTCTTCATGGAACAACTTGGCAAATCAAGTTCGAAGTTGGTAACGTGGTTCGGGAAAGTACATACAAACTGAGAGTTGCAATTGCATCTGCAACATTAGCTGAATTGCAGATTCGAATAAATGACCCCAATGCAAGACGACCCCTATTTACCAGTGGATTAATAGGAAGGGACAACTCAATTGCAAGACATGGAATTCACGGAATCTATTGGCTGTACCATGTGGATATACCAGGTTCTCTTCTTATTGATGGCACAAATACCTTATATTTTACTCAACCAAGATGCACCAGTTCCTTCCAGGGTATCATCACTGCTAGTACCACCATGCCATCACTAGGGGTGCAACTTAGTATTCAAGATAATCATGTGGTGATCGATAATGGCATACTAAAAATCACCTTATCAAATCCTGGGGGAATTGTGACTGGAATACAGTATAATGACATCGACAACTTGCTTGAAGTTTTGAATGAAGAATCTAATAGAGGGTATTGGGACCTTGTTTGGAGCTCACCCTCTAGTACAGGAACCGGTGGTACATTTGATGTCATCAAAGGAACTACTTTCAAAGTTGTAGTTGAAAACGAGGACCAAGTTGAGTTATCCTTCACTAGGACGTGGGACGTCTCTCTCGAGGGCAAGTTGGTTCCTTTAAATATTGACAAAAGGTTCATAATGCTTCGTGGTTCTTCTGGCTTCTACTCCTATGCAATTTATGAGCACTTGGGGGAGTGGCCTGCTTTCAATCTTGACGAAACAAGAATTGCTTTCAAGCTTAGAAAAGACAAGTTCCATTATATGGCGATGGCAGATAATAGACAAAGAAACATGCCTCTTCCAGATGATCGATCGCCACCTAGGGGCAAAGCCCTTGCCTATCCAGAGGCAGTTCTACTAGTCAATCCCATCGAACCAGAACTTAAAGGGGAGGTGGATGACAAGTACCAATATTCGTGTGACAACAAAGATAGTCAAGTTCATGGATGGATCTGCATGGATCCTGCTGTGGGATTCTGGCTAATTACTCCCAGCAATGAATTTCGATCTGGTGGACCCCTCAAACAAAACTTAACTTCTCATGTGGGGCCAACCACTCTTGCTGTGTTTCTGAGTGCTCATTATAGCGGAGAGGATCTGGTGCCTAAGTTCAATGCTGGTGAGGCATGGAAGAAAGTTTTCGGTCCAGTTTTCATTTATTTGAATTCTCCATATGATGGAGGTGACCCCATTCAGCTATGGGAAGACGCTAAACTACAGATGTTGGTCCAAGTTCAAAGCTGGCCTTACAGTTTTCCTGAATCAGAGGATTTCCCTAAGTGGGACCAACGTGGTAATGTTAGTGGCAGGCTTTTGGTTAGAGAGAGGTATATAAACGATGACTATATATCGGCAAAAGGTGCCTATGTTGGTTTGGCTCCACCAGGAGGCGTGGGATCTTGGCAAAGAGAATGCAAGAACTATCAGTTTTGGGCTAAAGCAGATGATGATGGCTACTTCTCCATCAGCAATATACGTGCTGGCGACTACAATGTTTACGCGTGGGTGCCTGGTTTTATTGGTGACTATAAATATGACGTTGTTATGAACATAACAGAAGGTTGTGAGATCGACCTTGGTGATCTTGTGTATGAACCTCCAAGAGATGGTCCAACATTGTGGGAAATTGGCATCCCTGATCGCTCAGCTGCTGAGTTCTATGTTCCTGACCCAAATCCCAAATATGTCAACAAACTCTATGTTAATCATCCTGACAAGTTTAGGCAATATGGATTATGGGAGAGATATGCAGAACTATACCCTGACAAAGACTTGATCTACACAGTTGGTGTTAGTGACTACACCAAAGATTGGTTCTTTGCTCAAGTTACCAGGAAAAAAGATGATAATACATATCAAGGAACCACGTGGCAAATCAAGTTTCAGCTTGCTAATGTGAACAAAAGCAGCACCTATAAACTGCGAGTGGCTTTGGCATCAGCTACATTTTCTGAACTTCAGGTTCGAGTTAATAATCCAAAGGCAACCCGTCCTCTATTTTCAAGTGGGTTGATAGGAAGGGATAACTCGATTGCTAGGCACGGAATTCATGGACTTTATTGGCTTTACAATGTGGACATAGCAGGCACACTACTTGTTGAAGGAGATAACACCATCTTTTTGACACAGAGTAGAGGCAATGGTCCATTTCAGGCCATTATGTATGACTATGTTCGTTTGGAAGGTCCACCATCGTCTAGCTTCATTAACAAAATTTGA 3813 0.4217 MSATGVHLHIQDHHVVMDNGIVQVTLSNPDGIVTGIRYNGVDNLLEVLNKETNRGYWDLVWSAPGSKGMFDVIKGTHFKVIVQNEEQLELSFTRMWDHSLEGKFVPLNIDKRFILLRGSSGFYSYGIYEHLNGWPDFDLGETRITFKLRKDKFQYMAMADNRRRVLPYPEDRMPGRCQTLAYPEAVLLVNPKDPQLKGEVDDKYQYSCINFDNRVHGWISFNPPVGFWQITPSDEFRSGGPLKQNLTSHVGPTTLAMFLSGHYCGQDLVPKFRGGEPWKKVFGPVYIYLNSGAVGDDPHWLWEDAKIQMMNEVQSWPYSFPASEDFLKSDQRGYVSGRLLVLDRYICTDLISANGAYVGLAPPGDAGSWQRECKDYQFWTRADENGFFTIRNVRPGDYNLFAWVPGFVGDYKFGDFVKITSGSCNELGEIVYEPPRDGPTLWEIGIPDRSAAKFYVPDPNPQHINKLFINHPDRFRQYGLWDRYTELYPDGDLVYTIGISDYRKDWFYAQVPRKKEDNTLHGTTWQIKFEVGNVVRESTYKLRVAIASATLAELQIRINDPNARRPLFTSGLIGRDNSIARHGIHGIYWLYHVDIPGSLLIDGTNTLYFTQPRCTSSFQGIITASTTMPSLGVQLSIQDNHVVIDNGILKITLSNPGGIVTGIQYNDIDNLLEVLNEESNRGYWDLVWSSPSSTGTGGTFDVIKGTTFKVVVENEDQVELSFTRTWDVSLEGKLVPLNIDKRFIMLRGSSGFYSYAIYEHLGEWPAFNLDETRIAFKLRKDKFHYMAMADNRQRNMPLPDDRSPPRGKALAYPEAVLLVNPIEPELKGEVDDKYQYSCDNKDSQVHGWICMDPAVGFWLITPSNEFRSGGPLKQNLTSHVGPTTLAVFLSAHYSGEDLVPKFNAGEAWKKVFGPVFIYLNSPYDGGDPIQLWEDAKLQMLVQVQSWPYSFPESEDFPKWDQRGNVSGRLLVRERYINDDYISAKGAYVGLAPPGGVGSWQRECKNYQFWAKADDDGYFSISNIRAGDYNVYAWVPGFIGDYKYDVVMNITEGCEIDLGDLVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPKYVNKLYVNHPDKFRQYGLWERYAELYPDKDLIYTVGVSDYTKDWFFAQVTRKKDDNTYQGTTWQIKFQLANVNKSSTYKLRVALASATFSELQVRVNNPKATRPLFSSGLIGRDNSIARHGIHGLYWLYNVDIAGTLLVEGDNTIFLTQSRGNGPFQAIMYDYVRLEGPPSSSFINKI 1270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01336 1270 Gene3D - 438 629 - -
Cca03g01336 1270 Gene3D - 1068 1259 - -
Cca03g01336 1270 CDD RGL4_M 331 430 IPR029413 -
Cca03g01336 1270 SUPERFAMILY Galactose mutarotase-like 14 296 IPR011013 GO:0003824|GO:0005975|GO:0030246
Cca03g01336 1270 SUPERFAMILY Galactose-binding domain-like 437 621 IPR008979 -
Cca03g01336 1270 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 623 1264 - -
Cca03g01336 1270 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 622 - -
Cca03g01336 1270 CDD RGL4_N 635 931 - -
Cca03g01336 1270 CDD RGL4_C 442 622 - -
Cca03g01336 1270 Pfam Polysaccharide lyase family 4, domain III 440 622 IPR029411 -
Cca03g01336 1270 Pfam Polysaccharide lyase family 4, domain III 1070 1258 IPR029411 -
Cca03g01336 1270 CDD RGL4_M 961 1060 IPR029413 -
Cca03g01336 1270 SUPERFAMILY Galactose mutarotase-like 636 921 IPR011013 GO:0003824|GO:0005975|GO:0030246
Cca03g01336 1270 Pfam Polysaccharide lyase family 4, domain II 984 1056 IPR029413 -
Cca03g01336 1270 Pfam Polysaccharide lyase family 4, domain II 354 424 IPR029413 -
Cca03g01336 1270 SUPERFAMILY Starch-binding domain-like 995 1048 IPR013784 GO:0030246
Cca03g01336 1270 SUPERFAMILY Starch-binding domain-like 374 424 IPR013784 GO:0030246
Cca03g01336 1270 CDD RGL4_C 1072 1259 - -
Cca03g01336 1270 Gene3D - 960 1052 - -
Cca03g01336 1270 Gene3D - 328 427 - -
Cca03g01336 1270 CDD RGL4_N 14 292 - -
Cca03g01336 1270 Gene3D - 7 305 IPR014718 GO:0030246
Cca03g01336 1270 Gene3D - 632 923 IPR014718 GO:0030246
Cca03g01336 1270 SUPERFAMILY Galactose-binding domain-like 1067 1259 IPR008979 -
Cca03g01336 1270 Pfam Rhamnogalacturonate lyase family 622 830 IPR010325 -
Cca03g01336 1270 Pfam Rhamnogalacturonate lyase family 9 200 IPR010325 -
Cca03g01336 1270 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 623 1264 - -
Cca03g01336 1270 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 622 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01336 Cca-Chr3 31351332 31363551 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01336 1 622 Polysaccharide Lyase AT1G09890 68.750 0.0 901
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01336 K18195 - gmx:100793563 1264.21