Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01335 ATGAACTTCACCAATCGCTTCAGCTTCTTGATGCTGCTTTTCATTCTGGTTCTGGGCTCTGCTACTAAACCAGGAGTACGATTGGATATTCAAGATAAACATGTGATAATGGATAATGGCATAGTTCGGGTCAACTTATCAAATCCTGAAGGAATTGTCACGGGAATTCAATACAATGGCCTCGACAATTTGCTCGAAGTTCTTAACGAAGAATCTAACAGAGGGTACTGGGATATCGTATGGGACCAAGGTGGTGAAAAAAGAACAGAAAAAGGAAAAAAGGGAAAGGGCACACTTGACAGATTGGAAGCGACGAATTTTACGGTAATCGTGAAAAATGAGGAACAAGTAGAGCTATCATTCACGAGAACATGGAATTCCTCTCTTGAGGGGAAGTTTGCTCCACTCAATATTGATAAAAGGTTTATAATGCTTGCTGGTTCCTCTGGTTTCTACACCTATGCCATTTATGAACATTTAAAGGAATGGCCAGCTTTTGATCTTGACAATACTAGGATCGCATTCAAGCTTAGAAAAGACAAGTTCTGCTACATGGCTGTAGCAGACAACAGACAAAGATTTATGCCTCTGCCTGATGACCGGTTACCGCCAAGAGGTGAAGTTCTGGCCTACCCTGAGGCTGTGCGACTTGTTGATCCTCTAGAACCTGAATTCAAAGGAGAGGTAGATGATAAATATGAGTACGCGTGCGAGAGCCGATACAACCACGTTCACGGTTGGATACACCTTGATCCATCCAATTCCACTGGATTCTGGCTAATTACGCCAAGTTATGAGTTCCGATCTGCTGGACCCCTTAAGCAATATCTTACTTCTCACGTGGGCCCCACCACACTCTCTGTATTTCATAGCACGCATTATTCAGGGGTGGATCTCATAATGAAATTTGGGCCCAATGAGCCGTGGAAGAAAGTCTATGGGCCCATATTCATATACCTCAATTCTCTATCTAACGGGTTCAGCCCAACCCGCCTCTGGGAGGACGCCAAACAACAGATGGTCAATGAAGTTGAAAGCTGGCCCTATACATTTCCAGCTTCCAAGGACTTTCTTTCATCTGAGCAACGAGGTAAAGTTCAAGGTAGATTGCTTGTCCGAGATAGGTACATTAGTGATGCATTCATCCCAGTTAGTGGTGCTTATGTGGGACTAGCAGCCATAGGAGAAGTTGGATCTTGGCAAAGGGAATGTAAGGGTTATCAATTTTGGACCATTACTGATGATAAAGGCTATTTCTCAATTATTAACATACGCCCTGGGGACTATAATCTCTACTCCTGGGTCACTGGGTTCATTGGTGATTATCAATTCGATAGTGTCATCAATGTAACTTCAGGTTGTGATATTAATGTGAATGAGCTTGTTTATGAACCACCAAGAGATGGCCCTACGTTGTGGGAAATAGGCATGCCTGATCGTTCAGCTGCTGAGTTCTTTGTTCCTGATCCAAATCCCATGTACATTAACAGACTCTATGTCAACCATCCAGAAAGGTTTAGGCAATATGGCTTGTGGGAGAGGTATGCTGAATTGTATCCAAAGGAAGACCTAGTTTACAATGTTGGCATTAGCGACTACAGAAAAGACTGGTTCTTTGCTCAGGTTACCAGGAAGAAAGACAATAACACCTACCAAGGAACCACATGGAAAATTAATTTCAACCTTGATTGTGTGAATAAAAATGGAACCTACACATTGAGAGTGGCTCTGGCGTCTGTGCATTCAGCTGAATTAGAGATTCGGATAAACAATTTAGAAGCAAATCCACCTTTATTTTCAAGTGGAGTAATTGGAAAGGAGAATACGATAGCTAGACATGGAATTCACGGGCTCTACTGGCTATACAGCATTGAAGTAGAAGGCAATCTTCTTGTGCAGGGGAACAATACCATTTTTCTAACGCAAGCAACAAACACAAGTCCTTTTATAGGAATTTTGTATGATTATATTCGTTTAGAATACAAACAATGA 1992 0.4207 MNFTNRFSFLMLLFILVLGSATKPGVRLDIQDKHVIMDNGIVRVNLSNPEGIVTGIQYNGLDNLLEVLNEESNRGYWDIVWDQGGEKRTEKGKKGKGTLDRLEATNFTVIVKNEEQVELSFTRTWNSSLEGKFAPLNIDKRFIMLAGSSGFYTYAIYEHLKEWPAFDLDNTRIAFKLRKDKFCYMAVADNRQRFMPLPDDRLPPRGEVLAYPEAVRLVDPLEPEFKGEVDDKYEYACESRYNHVHGWIHLDPSNSTGFWLITPSYEFRSAGPLKQYLTSHVGPTTLSVFHSTHYSGVDLIMKFGPNEPWKKVYGPIFIYLNSLSNGFSPTRLWEDAKQQMVNEVESWPYTFPASKDFLSSEQRGKVQGRLLVRDRYISDAFIPVSGAYVGLAAIGEVGSWQRECKGYQFWTITDDKGYFSIINIRPGDYNLYSWVTGFIGDYQFDSVINVTSGCDINVNELVYEPPRDGPTLWEIGMPDRSAAEFFVPDPNPMYINRLYVNHPERFRQYGLWERYAELYPKEDLVYNVGISDYRKDWFFAQVTRKKDNNTYQGTTWKINFNLDCVNKNGTYTLRVALASVHSAELEIRINNLEANPPLFSSGVIGKENTIARHGIHGLYWLYSIEVEGNLLVQGNNTIFLTQATNTSPFIGILYDYIRLEYKQ 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01335 663 Pfam Rhamnogalacturonate lyase family 24 229 IPR010325 -
Cca03g01335 663 Gene3D - 469 660 - -
Cca03g01335 663 PANTHER RHAMNOGALACTURONATE LYASE B-LIKE PROTEIN 1 662 - -
Cca03g01335 663 CDD RGL4_N 31 322 - -
Cca03g01335 663 Gene3D - 359 459 - -
Cca03g01335 663 SUPERFAMILY Galactose-binding domain-like 468 661 IPR008979 -
Cca03g01335 663 Pfam Polysaccharide lyase family 4, domain III 471 659 IPR029411 -
Cca03g01335 663 Pfam Polysaccharide lyase family 4, domain II 385 457 IPR029413 -
Cca03g01335 663 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 662 - -
Cca03g01335 663 SUPERFAMILY Starch-binding domain-like 360 459 IPR013784 GO:0030246
Cca03g01335 663 CDD RGL4_C 473 660 - -
Cca03g01335 663 CDD RGL4_M 362 461 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01335 Cca-Chr3 31340865 31349025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01335 26 660 Polysaccharide Lyase AT1G09890 66.614 0.0 879
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01335 K18195 - gmx:100786488 1229.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01335 03 31340865 31349025 Cca03g01335 03 31340865 31349025 ECH