Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01334 ATGGCTACTGCTGTTACTCGTCGCCCTTCCTTCACCCTCTtcgttctcattctcattctcattctattcctttcccatGCCAGAGAAACGCCGCCGCCAGCTCCCAATCTCACTGCTCCACCGCCGCCCGACACCCACGGCCCCGCCACGCCCTTCCGACCAGGCATACCCGTCGTCGTCTGCGTTTTGACCACCCTCTTCTCCCTCACCTCCCTCATGCTCCTCTACATCAAGCACTGCAACGGCGCCGCCGGAGGAAACGCCACGCCGTGGACGGCGGCGGCGCCTTTGGACGGGAGGAAGAACTCCGGCATTGAGCGGTCGGTGGTGGAGTCGCTGCCGGTGTTCAGATTCGGCGCGCTGCGCGGGCAGAAGGAGGGCCTGGACTGCGCCGTTTGCCTGACGAGGTTCGAGGCGGCGGAGGTCCTCCGGCTGCTGCCGAAGTGCAAGCACGCGTTCCACGTGGAGTGCGTGGACACGTGGCTGGACGCGCATTCGACGTGTCCTCTGTGTCGGTACCGCGTGGATCCGGAGGACGTGCTTCTGGTGGAGGATGCGAAGAAGAGAAGCAACGAGCGAGAAAGCGTGCGTTCGGGCTTGGACCTGGAGAAGCAGGAGATGGTGGAGTCTCATCGGAGGCACTCGTCGGTCGGGGAGAGAGAAACGCAGCAGAGCCGGAGGTGGACGGCGTCGTTTCGAAGGTCGTTGGATAGCGCCACATCGAGAAAGAAGAACAACGAGAGCGTTGGTTGTTTTGTGCGTACGAGTGCGAGAAAAGACGGGATGTTGTTGACGCAAGAGACGGAGAGAGAGGGAGATAGGACAAGCGTGGAACGGAGGTTGGAGCACAGGATCATTGTCTCcccaggcccaggcccaggcccagtcccagtcccagtcccaTTGGGGGTCCAGCAGCGGTGGAGCGACGTGCTTCCTTCGGACCTGCTCTATCTGACGTCAGAGATGATTATGAGCGAGGCCCACGATGTGAGAGGGTTTATAAATTCGAGAAGTGTTTCTGAGATCACGGGATTCAGCAGGTTCTCCAGCGTCATCGAAGAGGGGCATGGGCATGGGCATGGGGAGAGGGAGAGAGAAGAAGGGTTAGTCAAAAGATGGCTATTGGGTTGGATTTCAAAGTCTTAA 1149 0.5587 MATAVTRRPSFTLFVLILILILFLSHARETPPPAPNLTAPPPPDTHGPATPFRPGIPVVVCVLTTLFSLTSLMLLYIKHCNGAAGGNATPWTAAAPLDGRKNSGIERSVVESLPVFRFGALRGQKEGLDCAVCLTRFEAAEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDVLLVEDAKKRSNERESVRSGLDLEKQEMVESHRRHSSVGERETQQSRRWTASFRRSLDSATSRKKNNESVGCFVRTSARKDGMLLTQETEREGDRTSVERRLEHRIIVSPGPGPGPVPVPVPLGVQQRWSDVLPSDLLYLTSEMIMSEAHDVRGFINSRSVSEITGFSRFSSVIEEGHGHGHGEREREEGLVKRWLLGWISKS 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01334 382 Pfam Ring finger domain 129 172 IPR001841 -
Cca03g01334 382 CDD RING-H2_EL5_like 129 172 - -
Cca03g01334 382 MobiDBLite consensus disorder prediction 193 241 - -
Cca03g01334 382 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Cca03g01334 382 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 34 381 - -
Cca03g01334 382 MobiDBLite consensus disorder prediction 222 241 - -
Cca03g01334 382 MobiDBLite consensus disorder prediction 193 221 - -
Cca03g01334 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 179 IPR013083 -
Cca03g01334 382 SMART ring_2 130 171 IPR001841 -
Cca03g01334 382 SUPERFAMILY RING/U-box 124 177 - -
Cca03g01334 382 PANTHER RING-H2 FINGER PROTEIN ATL43 34 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01334 Cca-Chr3 31334098 31335736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01334 46 375 C3H Transcription Factor Family AT5G05810 47.215 3.18e-80 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01334 K19041 - gmx:100794083 391.349