Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01332 ATGAAGGGTGAATACGTAGAACAACATACTAAGAATGAAACACCACCTAGTATGTTCTCAAAGCTTCAGCCTCACCCCTTCCAACACCACCCTTTCCAACTCCCCACCGAGGAACCCACCGCTACACCCACAACCGCTCAGAAGGCCAACTCCTCCGGCGGGGGCGACGGCGCCACCATTGAGGTCGTGCGGCGTCCCAGAGGTCGTCCTCCCGGCTCCAAAAACAAGCCCAAGCCACCCGTTATCATAACCCGGGACCCCGAACCCGCTATGAGCCCCTACATTCTCGAAGTTTCCGGAGGAAACGACGTCGTCGATGCCATCGCGCAGTTCAGCCGCCGCAAGAACATGGGCATCTGCGTCCTCACCGGCTCCGGAGCCGTCGCCAACGTCACGCTTCGTCAACCCTCCACCACCCCCGGCGCCACCGTTACTTTCCACGGCCGCTTCGACATACTCTCCGTCTCCGCCACCTTCCTCCCGCAGCAGTCGCCGCCGGTTCCCAACGGCTTCGCCATCTCGCTCGCCGGGCCGCAGGGGCAGATCGTCGGAGGACTCGTCGCCGGCGCGTTGATCGCCGCGGGGACGGTGTTCGTGATAGCCGCGTCGTTCAACACCCCCGCGTACCACAGGCTTCCGCCGGAGGAGGAAGGCACCTCCGTCGGGGATGGACATTCGCCGGCGGTGTCCGGCGGAGGAGACAGCGGCGGGCATGGGCAGGCGGAGTCGTGCGGAATGTCCATGTACAGCTGTCACTTGCCCTCTGATGTTATTTGGGCTCCGACGGCGAGACCACCTCCTCCGCCACCACCTTACTGA 819 0.6337 MKGEYVEQHTKNETPPSMFSKLQPHPFQHHPFQLPTEEPTATPTTAQKANSSGGGDGATIEVVRRPRGRPPGSKNKPKPPVIITRDPEPAMSPYILEVSGGNDVVDAIAQFSRRKNMGICVLTGSGAVANVTLRQPSTTPGATVTFHGRFDILSVSATFLPQQSPPVPNGFAISLAGPQGQIVGGLVAGALIAAGTVFVIAASFNTPAYHRLPPEEEGTSVGDGHSPAVSGGGDSGGHGQAESCGMSMYSCHLPSDVIWAPTARPPPPPPPY 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01332 272 ProSiteProfiles PPC domain profile profile. 88 225 IPR005175 -
Cca03g01332 272 MobiDBLite consensus disorder prediction 35 54 - -
Cca03g01332 272 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17-RELATED 20 270 - -
Cca03g01332 272 SUPERFAMILY AF0104/ALDC/Ptd012-like 90 221 - -
Cca03g01332 272 CDD DUF296 93 204 IPR005175 -
Cca03g01332 272 Gene3D - 92 224 - -
Cca03g01332 272 MobiDBLite consensus disorder prediction 211 241 - -
Cca03g01332 272 MobiDBLite consensus disorder prediction 1 87 - -
Cca03g01332 272 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 20 270 IPR014476 GO:0003680
Cca03g01332 272 Pfam Plants and Prokaryotes Conserved (PCC) domain 93 205 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01332 Cca-Chr3 31251765 31254039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01332 1 268 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 60.884 2.03e-104 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01332 - - gmx:100788098 421.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01332 03 31251765 31254039 Cca03g01332 03 31251765 31254039 ECH