Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01321 ATGGCACCCAGTTTTGACTGTGTTTCAAGCCTCCTTTGCGCAGAGGACGACAGCGTTTTCGACGAGAGCCATAATGGGGTGGGGGTGTACGAGGACACGTGGCGTCCCAGGAGGCACCACTTTGATGAAACAGATGAGTTGCCATTGCTGAGTGATGATTGTTTTGCGCTGATGGTGGAAAAGGAGTGCCAACATTGGCCTGGTGTCGGTTACTTGAATAAACTTCACACCGGAGATTTCGACTTTGGGTCCAGAATGGAGGCCATTGATTGGATTCAAAAGGTCCGATCGTATTTCGGTTTTGGTCCTCTATGTGGATATCTATCTGTAAATTACTTGGACCGATTCCTTTCTTCATATGAATTACCAAAGGGAAGAGCTTGGACAATGCAATTGTTGGCTGTGGCTTGTTTATCTCTGGCAGCCAAACTAGATGAGACAGAAGTTCCACTCTCCCTTGATTTACAGGTGGGTGAATCGAAGTTTATATTTGAGGCTAAAACCATACAGAGAATGGAGCTTCTTGTACTAAGCACATTAAAGTGGAGAATGCAAGCAATTACTCCTTTCACCTTCCTTGATTACTTTCTTTGCAAGATCAACGGTGATCAAAGTCCATCAAGGTCTTCAATTTTGCGATCCATCCAACTTATATCAAGCACTGCAAGAGATATTGACTTCTTGGAGTTCAAACCATCAGAGGTTGCAGCAGCAGTGGCTATCTATGTCATGGGGGAAACCCAAACAGTTGACACTGAAAAAGCAATTTCTGTTCTGATTCAACACGTAGAAAAGGAGAGAGTATTGAAGTGTGTTAAAATGATCCATGAGTTGGCATCCAACAGTATCTCTGCCAAGGATTCAAGTGCTTCTGTCACTTGCTTACCTCAAAGTCCAATAGGTGTGTTAGATGCTTTGTGCTTCAGCTACAAAAGCTATGACACAAATGCTGGTTCATGTGCAAATTCTTCACATAATAGTCCCGATGCTAAAAGGAGGAAGTTAAACAAAACCTGTGGAGCAGAGCTATTGTAG 1035 0.4338 MAPSFDCVSSLLCAEDDSVFDESHNGVGVYEDTWRPRRHHFDETDELPLLSDDCFALMVEKECQHWPGVGYLNKLHTGDFDFGSRMEAIDWIQKVRSYFGFGPLCGYLSVNYLDRFLSSYELPKGRAWTMQLLAVACLSLAAKLDETEVPLSLDLQVGESKFIFEAKTIQRMELLVLSTLKWRMQAITPFTFLDYFLCKINGDQSPSRSSILRSIQLISSTARDIDFLEFKPSEVAAAVAIYVMGETQTVDTEKAISVLIQHVEKERVLKCVKMIHELASNSISAKDSSASVTCLPQSPIGVLDALCFSYKSYDTNAGSCANSSHNSPDAKRRKLNKTCGAELL 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01321 344 PANTHER CYCLINS 1 337 IPR039361 -
Cca03g01321 344 Pfam Cyclin, C-terminal domain 187 284 IPR004367 -
Cca03g01321 344 CDD CYCLIN 84 177 IPR013763 -
Cca03g01321 344 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 1 337 - -
Cca03g01321 344 SUPERFAMILY Cyclin-like 46 184 IPR036915 -
Cca03g01321 344 Pfam Cyclin, N-terminal domain 53 184 IPR006671 -
Cca03g01321 344 SUPERFAMILY Cyclin-like 169 296 IPR036915 -
Cca03g01321 344 SMART Cyclin_C_2 187 298 IPR004367 -
Cca03g01321 344 Gene3D - 68 185 - -
Cca03g01321 344 Gene3D - 58 274 - -
Cca03g01321 344 SMART cyclin_7 90 178 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01321 Cca-Chr3 31079304 31082010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01321 52 321 Core Cell Cycle Gene Families AT2G22490 48.201 2.59e-83 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01321 K18810 - gmx:547739 567.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01321 03 31079304 31082010 Cca03g01321 03 31079304 31082010 ECH