Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01316 ATGAGAGTTTCCACTTTAAAGTTGAAAGACTCCTTCTTTCCAGATATGGGTTCCCATGTCTCAGTGATTCATCCTTCCTCTCACTTCCACTTCCCATCATGGGCTACCTCTCTTGCAATGCCCACTCCGCAATCGCCACCTGCCATCCCCATTTCAGAAGACCCATCCCCATCCGCCAGTTCGCCTACTCCGACCTCCCACGGCCGAGTGTACAAGGCCACCCTGGACGGCGGGAAGCTCCTGGCGGCCGTGAAAATAAGCAAACAGAACTGCAGCAGCCCCGCCGAAAACGAGATGGAGATCCTCTCCGAGGTGGCGAGCGAGCGGGTGCGCAGGCTCCGCTACGCACTCCAGGTGGCCAAAGCCCTTCGCCACTTGCACTCCTCCAACCCTCCCGTTATCCACCGCGACGTTAAGTCTTCCAACGTCTTAATCGACCGGAACGGGAACGCCAGACTCGGCGACTTCGGCCTCGCGCTCAGGGGACACGTCCAGGACGCTCGCGTCAACCGCACGCCGCCCGCCGGGACGTTAGGCTACCTCGACCCCTGCTATCTTGCGCCCGAGGATCTCACCTCCAAGAGCGACGTCTTCAGCTTCGGGATCTTGCTCCTCGAGATTCTCACCGGAAGGAACGCCATCGACGTTAACTTCACTCCCCCCTCCCTCCTCCACTGGGCCATTCCCTCCATCAAGCTCCGCGACTTCGCCCCAATCTTCGACCCCCGGATCGGACCGCCGCCGGAGCTCGTAAGCCGCCTCGCGCTGCTCGCCGCCAGGTGCGTCAGGTCGACTGCCGCCAAGCGCCCCTCCATGGCGGAGGGTGGGATCCGCgcgacgccggcggtgtggtcgagtctgcggcggcgcgtggtggagagcgcggtggcggtggcggcgTGGGAGGAGTGTGAGTCGGAGAATGATGGGAGTGAGGAGGTGGTGAAAAGTGGGAACAGGAGGAAGGGGAAAGTATCGAGTGTGTCGGGTGTAGGGTATGGGAGTGTGGTCTCCAATAATGATAAAGGGATGAGGTCAAAATCCATTGGGTCTGGGTCTGGGTCTGGTTGGGTGAAAATGCAGCAGGCCCAGCAAAGCGAgcatgggcatgggcatgggcatgggcatgggTTAGGGAGAAGGAAAGTGACGAGGCTGAAGAAGTCAAAGTCTATGGGGGTTTTGCAAGGTTTTTTGTATGGTGAGAATAGCAATGATGCAATTTGTTCGGCAATGGCGAAGTTGGTTGTTACGGATAAGTTGGAAAAGAAACCGTTAGTGGAAATGAAGGAATCATTGGAGGAATGA 1308 0.5306 MRVSTLKLKDSFFPDMGSHVSVIHPSSHFHFPSWATSLAMPTPQSPPAIPISEDPSPSASSPTPTSHGRVYKATLDGGKLLAAVKISKQNCSSPAENEMEILSEVASERVRRLRYALQVAKALRHLHSSNPPVIHRDVKSSNVLIDRNGNARLGDFGLALRGHVQDARVNRTPPAGTLGYLDPCYLAPEDLTSKSDVFSFGILLLEILTGRNAIDVNFTPPSLLHWAIPSIKLRDFAPIFDPRIGPPPELVSRLALLAARCVRSTAAKRPSMAEGGIRATPAVWSSLRRRVVESAVAVAAWEECESENDGSEEVVKSGNRRKGKVSSVSGVGYGSVVSNNDKGMRSKSIGSGSGSGWVKMQQAQQSEHGHGHGHGHGLGRRKVTRLKKSKSMGVLQGFLYGENSNDAICSAMAKLVVTDKLEKKPLVEMKESLEE 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01316 435 ProSiteProfiles Protein kinase domain profile. 1 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01316 435 MobiDBLite consensus disorder prediction 336 368 - -
Cca03g01316 435 MobiDBLite consensus disorder prediction 336 381 - -
Cca03g01316 435 MobiDBLite consensus disorder prediction 42 69 - -
Cca03g01316 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672|GO:0006468
Cca03g01316 435 Pfam Protein kinase domain 108 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01316 435 Gene3D Transferase(Phosphotransferase) domain 1 101 280 - -
Cca03g01316 435 SUPERFAMILY Protein kinase-like (PK-like) 66 274 IPR011009 -
Cca03g01316 435 PANTHER OS01G0750732 PROTEIN 110 432 - -
Cca03g01316 435 PANTHER OS01G0750732 PROTEIN 66 110 - -
Cca03g01316 435 PANTHER - 110 432 - -
Cca03g01316 435 PANTHER - 66 110 - -
Cca03g01316 435 SMART serkin_6 66 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01316 435 MobiDBLite consensus disorder prediction 54 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01316 Cca-Chr3 30980229 30982788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01316 110 272 Receptor kinase-like Gene Family AT3G59420 48.795 2.12e-43 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Cca03g01316 Pkinase 2.5e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01316 - - gmx:100799382 379.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01316 03 30980229 30982788 Cca03g01316 03 30980229 30982788 ECH
Cca05g01104 05 28211643 28213301 Cca03g01316 03 30980229 30982788 PCT