Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01315 ATGGAATTTgacgagcacgaggaccaagaggaagaggaggaggaggaggaggaagaagaagaggaggaAATGGGATTCTCAGTGGCGCCGCCGGGTTACGACTCGCTCGGGAACACACCGCTCAGGTCTAAAGTCACCGCCGCCGAGGGCGCCGCTTCCGCTCGCAAAGGCGTGTCCGCGGGAACGACCACTGTTAGATACAGAGAATGTCAGAAGAACCACGCCTTTCTGGCCGCCGGAGAGGAAGGCACGCTGGAGGCCGTCATATGCGCCGCCTGTAACTGCCACCGCAATTTCCACCGGAAGGAGATCGACGGCGAAATCAGCCCTTACCACCAGCAACCGCGGTCGCAGCCGCAGTACCACCACCAATTCTCCCCTTACTACCACCGCGGGCCGCCGCATGCTGGCGCGGGATATCTCCACCACCCCCTGGTAACTCCGCCGGTGTCGCAGCACCGGCCCTTGGCTCTGCCGCCGCTGGCCTCGGGAGGAGTGTTCAGTAGAGAAGAAGAAGACATGTCAAACCCGAGCAGCAGCGGCGGAGGAGTTGGTGGCGGGAGCGGAACGAAGAAGAGGTTTAGGACAAAGTTCACGCAGGAGCAAAAGGATAAGATGCTGGCATTTGCGGAGAAGCTTGGGTGGAGAATCCAGAAGCATGACGAAGCTGCTGTGGAGCAATTCTGTGCTGAAAATTCTGTCAAGAGACACGTCCTCAAGGTTTGGATGCACAACAACAAACACACTCTCGCTAATTCCGAGCAACGTTCAGCTGGGAATGGATCCAACCACTCCACAATAATTGCCAATTCCGAATTCTCCTAA 825 0.5333 MEFDEHEDQEEEEEEEEEEEEEEMGFSVAPPGYDSLGNTPLRSKVTAAEGAASARKGVSAGTTTVRYRECQKNHAFLAAGEEGTLEAVICAACNCHRNFHRKEIDGEISPYHQQPRSQPQYHHQFSPYYHRGPPHAGAGYLHHPLVTPPVSQHRPLALPPLASGGVFSREEEDMSNPSSSGGGVGGGSGTKKRFRTKFTQEQKDKMLAFAEKLGWRIQKHDEAAVEQFCAENSVKRHVLKVWMHNNKHTLANSEQRSAGNGSNHSTIIANSEFS 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01315 274 MobiDBLite consensus disorder prediction 1 40 - -
Cca03g01315 274 MobiDBLite consensus disorder prediction 1 25 - -
Cca03g01315 274 MobiDBLite consensus disorder prediction 163 192 - -
Cca03g01315 274 MobiDBLite consensus disorder prediction 112 133 - -
Cca03g01315 274 Pfam ZF-HD protein dimerisation region 65 104 IPR006456 -
Cca03g01315 274 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 191 247 IPR006455 -
Cca03g01315 274 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 50 252 - -
Cca03g01315 274 MobiDBLite consensus disorder prediction 252 274 - -
Cca03g01315 274 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 50 252 - -
Cca03g01315 274 Coils Coil 1 23 - -
Cca03g01315 274 Gene3D - 176 254 - -
Cca03g01315 274 SUPERFAMILY Homeodomain-like 178 249 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01315 Cca-Chr3 30920462 30921732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01315 16 250 ZF-HD Transcription Factor Family AT4G24660 47.390 2.01e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Cca03g01315 ZF-HD_dimer 2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01315 - - gmx:100794438 402.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01315 03 30920462 30921732 Cca03g01315 03 30920462 30921732 ECH
Cca05g01103 05 28201649 28203308 Cca03g01315 03 30920462 30921732 PCT