Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01310 ATGACGAGGGCGAAGATCAAGATAAAGAAGATCGATAACATAACGGCGAGGCAAGTAACGTTCTCTAAGAGGAGGAGAGGGTTGTTCAAGAAAGCTGCAGAGCTTTCTGTGCTATGCGATGCTGAGGTTGGACTCATTGTTTTCTCATCTACGGGGAAGCTCTTTGATTTTAGCAGCTCCAATATGAATGACATAATCACAAGGTATAATACGCACTCCAATGGCATCACCAAATTGGACAGGCCTTCACTAGAGTTGCAGCTGGAGGCTAGCAATAGCGCCAAGTTGAGTAAGGAAATTGCAGATAGAAACCAAGAACTAAGTTGGTTGAAGGGCGACGATCTTGAAGGACTAGGTCTAAATGAGTTGCAGCAACTGGAGAAAACACTTGAAATGGGACTCGACCGTGTGGTTGAGTTTAAGGTAATCACAAATACATTAGAACTGTTGCTTTCTTTTGTGTGCATTCTTCTTATAAAGGGAATCCTGTTGGAAGAAGAGAACAAGCATTTAAAGAAAAAGCTAGTGGAGATTGAGATGGAGGCTATGCTGCGTAAAGCAAAAATTCCTTTCCTGGTGGAGTCAGATATGGGAATGCAGGAAGAAGGAGTTTCATTAGAGTCTACAAATAACATTAGCAGTTGCATCAGTGACCCTCCTCTTGAGGATGGTTCATCGGACACATCTCTTAAGTTAGGGCTACCCTTCTCTAACTGA 717 0.4282 MTRAKIKIKKIDNITARQVTFSKRRRGLFKKAAELSVLCDAEVGLIVFSSTGKLFDFSSSNMNDIITRYNTHSNGITKLDRPSLELQLEASNSAKLSKEIADRNQELSWLKGDDLEGLGLNELQQLEKTLEMGLDRVVEFKVITNTLELLLSFVCILLIKGILLEEENKHLKKKLVEIEMEAMLRKAKIPFLVESDMGMQEEGVSLESTNNISSCISDPPLEDGSSDTSLKLGLPFSN 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01310 238 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cca03g01310 238 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 232 - -
Cca03g01310 238 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 232 - -
Cca03g01310 238 MobiDBLite consensus disorder prediction 216 238 - -
Cca03g01310 238 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cca03g01310 238 CDD MADS_MEF2_like 12 75 IPR033896 GO:0000977|GO:0045944
Cca03g01310 238 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cca03g01310 238 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cca03g01310 238 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Cca03g01310 238 Pfam K-box region 91 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca03g01310 238 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cca03g01310 238 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cca03g01310 238 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cca03g01310 238 ProSiteProfiles K-box domain profile. 86 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca03g01310 238 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01310 Cca-Chr3 30845888 30855524 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01310 1 236 MADS-box Gene Family AT2G22540 50.410 1.64e-71 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Cca03g01310 K-box 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01310 - - gmx:100776749 337.806