Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01309 aTGAACTcaggcacaggcacagactcaggctcaggcagagCCGAAGCGGAACGGTTGATTGCAATCGGCGAGAAGCTTCTGCAGAGCCGCGATCTGAACGGCTCACGCGACTTCGCCATTCTGGCGCAGGAAGCCGAGCCGCTCCTCGAAGCCTCCGACCAGATCCTGGCCATCGCCGACGTCCTCCTCGCCGCGGAGACCCCGGTCGGCGGCGACCACCTGGATTGGTACGGCATCCTCCAGCTGGATCGCACGTGCGAAGACCAAGATCTCATCCGCAAGAACTACCGAAGGCTCGGCCTCCTCCTCCACCCGGACAAGAACCCTTTCACCCTCGCCGACCACGCCTTCAAGCTCGTCTCCGACGCCTGGGCCGTTTTATCCGACCCGGCCCAGAAGCCCGCCTACGACCGGGCCATCGCCGTCCCGGCCCAGCCCGCCACATTCTGGACCGCCTGCCCCTACTGCTATTTCCTCTACGAGTATCCCGCCGCGTGCCAGGGCTGCTGCCTCAGGTGCCAGAATTGTGAGAGGTCGTTTCATGGCCTTTCCATTCCCTCTCTCCCGCCGCTCGTGCCGGGCCAGGAGGCCTATTATTGTAACTGGGGCTGCTTGCCCATGGGCTTTGTTTTTGGTAAATTGGACCCCAATGGGCCTGGCCCTATGGTTGAGAATGGTCCCGATGTTGTTGGACCCGTCGCGGTGGAGAATGGGGTTGGGGTTGCTTCCAGGAAGCCTGGAAGGCCGCGACAGGTGCTTTGA 762 0.5984 MNSGTGTDSGSGRAEAERLIAIGEKLLQSRDLNGSRDFAILAQEAEPLLEASDQILAIADVLLAAETPVGGDHLDWYGILQLDRTCEDQDLIRKNYRRLGLLLHPDKNPFTLADHAFKLVSDAWAVLSDPAQKPAYDRAIAVPAQPATFWTACPYCYFLYEYPAACQGCCLRCQNCERSFHGLSIPSLPPLVPGQEAYYCNWGCLPMGFVFGKLDPNGPGPMVENGPDVVGPVAVENGVGVASRKPGRPRQVL 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01309 253 PRINTS DnaJ domain signature 77 95 IPR001623 -
Cca03g01309 253 PRINTS DnaJ domain signature 96 111 IPR001623 -
Cca03g01309 253 PRINTS DnaJ domain signature 112 132 IPR001623 -
Cca03g01309 253 ProSitePatterns Nt-dnaJ domain signature. 117 136 IPR018253 -
Cca03g01309 253 Gene3D DnaJ domain 67 148 IPR036869 -
Cca03g01309 253 PANTHER CHAPERONE DNAJ-DOMAIN PROTEIN 12 248 - -
Cca03g01309 253 CDD DnaJ 75 129 IPR001623 -
Cca03g01309 253 SUPERFAMILY Chaperone J-domain 70 139 IPR036869 -
Cca03g01309 253 ProSiteProfiles dnaJ domain profile. 75 140 IPR001623 -
Cca03g01309 253 Pfam DnaJ domain 75 137 IPR001623 -
Cca03g01309 253 SMART dnaj_3 74 132 IPR001623 -
Cca03g01309 253 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 12 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01309 Cca-Chr3 30815210 30816266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01309 8 240 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 50.382 3.28e-82 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01309 - - gmx:100802055 409.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01130 05 28535594 28537481 Cca03g01309 03 30815210 30816266 PCT