Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01307 ATGTTGTGCTCATCGCATGACCTTGGACTTCACTTCACTTCTATTAGATTGTCTCGCCACGTTAGGTTATACAGTAATAATGGAAGCTGTAAATTTTGTCATAAGCTCGTGCGTGGTGATCGATTATGTTTTGTTGCCATCAGTTTTTCGCCACGTGGTTTGAGGCAGGATACTTCAGCTCTGCTTTCCAGATTACATGTTCCACTTAGGCATGTATCTTTGAGATGTAATGCTTTGCCGTGTCGGTGTTCCTTAATGCCACCGGCTGGAGGGTGTGAGGCCCCACTTGTGAAAGTGGCTGCTGTTTCTTTGTCAAGGTCATATAATGCCATAGCAGGAAAACCAAGTGTGATTCAATTGATCCCTGCCCTTGGTATCATTGGCTTTGCTGTTTTTGGTCTTGAGCCACTCCTGCGTCTGAGCAGGAATTTGTTTCTCCAAGAAAGAACTGATAAAAGTTGGAAGAAAAGTAGTTCACATTATATTTTGACTTCTTATCTTCAACCTTTGCTGTTGTGGACTGGGGTAATGCTTATCTGCAGGGATTTAGATCCACTAGTCCTACCATCAGAAACCATTCAGGCTATGAAGCAACGGCTTCTAAGTTTTCTAAGATCTTTGTCAACGGTGCTTACATTTGCTTACTGTTCTTCAAGCTTAATTCGACAAGCACAAAAATTTTGCATGGAGAGTAATGACTCCAGTGATGGAAGAAACATGGGCATTGATTTTACTGGGAAAGCTATATATACTGCAATATGGGTTGCTGCTGTGTTGTTGTTCATGGAGTTGTTGGGTTTCTCCACACAGAAGTGGTTGACTGCTGGTGGTTTGGGCACAGTATTGCTTTCCCTTTCTGGTCGTGAGATATTTACGAACTTCCTGTCAAGTGTAATGATTCATGCAACTCGGCCATTTGTTGTAAATGAGCGGATTCAAACAAAAATTAAAGGATATGAGGTTAACGGTAAAGTTGAGCATGTAGGCTGGTGGTCACCAACAATAGTTAGAGGTTCCGATTGTGAAGCAGTTCATATTCCTAATCACAAATTGAGTGTAAATGTTGTGAGGAATCTTAGTAAGAAATCTCATTGGCGTATCAAGACTCACCTTGCTATAAGTCACATGGATGTTAACAAGATTAATAGTATTATAGCTGATATGCGCAAGGTTTTGGCCAAAAATCCTCAAGTAGAGCAGAGAAAGTTGCACAGACGGGTTTTTCTAGAGAATATTGATCCAGAAAATCAGGCTCTTATGATATTAGTATCTTGCTTTGTTAAAACTTCACGTTCTGAAGAGTACCTCCGTGTAAAGGAGGCAATTCTCTTGGATCTTCTCAGAGTTATCAGTCATCATGGAGCTCGGCTAGCCACACCCATCCGCACAGTTCAGAAGATGTGCAGTGATTCTGATTTAGATATTTATCCATTTGATGACACTATTCCCACTCGTTCTAGATCAAAGAAAAACCATAATTTTCCACTGATAGATCCACCTTATATAGTTAAGCCTTCAACTATTACAAATGAGGACAAAGATGACTGGATCGATGAAACCTTGGCATCTGACTTCAAAGTAGAACGTGGCAAATTTTCTGCAAAATCCAGCCCGACGTCAATATCTCAAGCCAAAATCCAGAATATGAATTTTGATATTTCAGTCCAGAAGACCTCCAAATCCAAAAAGCCCAAAAAGGAAAGGGCAGGAAGTGCAGGAAAGGGACCAACATCCAAAATTTTGTTAACATCCAATGAGTTTGGTTCTGGCGAGACTACTTCGCCATCAAAACAAGATGAAGAGAATTCTGCAATGTCATCATCATCAGTTAGTCGTTCGTTGGAAGAGAATATTGTTCTTGATGCTGCACTACTTGGCTCAAAGAGAACTCTTGCAATTGATGAAGAATTGATTCAATCTATTCCTGCAGAATCACAAGAAGTTGCAGTCCATCAGAATGGGAGTGAACCTCCTATTAACAAGGATAAGAAGGATGGTGAGATGTCTTCATTTCCAACAGCTAAACATATGGATTAG 2037 0.405 MLCSSHDLGLHFTSIRLSRHVRLYSNNGSCKFCHKLVRGDRLCFVAISFSPRGLRQDTSALLSRLHVPLRHVSLRCNALPCRCSLMPPAGGCEAPLVKVAAVSLSRSYNAIAGKPSVIQLIPALGIIGFAVFGLEPLLRLSRNLFLQERTDKSWKKSSSHYILTSYLQPLLLWTGVMLICRDLDPLVLPSETIQAMKQRLLSFLRSLSTVLTFAYCSSSLIRQAQKFCMESNDSSDGRNMGIDFTGKAIYTAIWVAAVLLFMELLGFSTQKWLTAGGLGTVLLSLSGREIFTNFLSSVMIHATRPFVVNERIQTKIKGYEVNGKVEHVGWWSPTIVRGSDCEAVHIPNHKLSVNVVRNLSKKSHWRIKTHLAISHMDVNKINSIIADMRKVLAKNPQVEQRKLHRRVFLENIDPENQALMILVSCFVKTSRSEEYLRVKEAILLDLLRVISHHGARLATPIRTVQKMCSDSDLDIYPFDDTIPTRSRSKKNHNFPLIDPPYIVKPSTITNEDKDDWIDETLASDFKVERGKFSAKSSPTSISQAKIQNMNFDISVQKTSKSKKPKKERAGSAGKGPTSKILLTSNEFGSGETTSPSKQDEENSAMSSSSVSRSLEENIVLDAALLGSKRTLAIDEELIQSIPAESQEVAVHQNGSEPPINKDKKDGEMSSFPTAKHMD 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01307 678 MobiDBLite consensus disorder prediction 536 557 - -
Cca03g01307 678 MobiDBLite consensus disorder prediction 643 678 - -
Cca03g01307 678 Pfam Mechanosensitive ion channel 247 456 IPR006685 GO:0016020|GO:0055085
Cca03g01307 678 MobiDBLite consensus disorder prediction 657 671 - -
Cca03g01307 678 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 12 566 IPR045042 -
Cca03g01307 678 SUPERFAMILY Sm-like ribonucleoproteins 290 360 IPR010920 -
Cca03g01307 678 Gene3D - 199 304 - -
Cca03g01307 678 MobiDBLite consensus disorder prediction 536 613 - -
Cca03g01307 678 PANTHER MECHANOSENSITIVE ION CHANNEL-LIKE PROTEIN 12 566 - -
Cca03g01307 678 MobiDBLite consensus disorder prediction 577 613 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01307 Cca-Chr3 30799426 30805312 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01307 5 636 Mechanosensitive Ion Channel Family AT1G58200 51.719 0.0 639
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01307 K22047 - gmx:100797302 1099.35