Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01306 ATGGTCTGCTCAGGTTCAATACGGTTGTCTCGTGACGTTAGGCTCAGCAGTGATGCTGGATTCTGTAGTTTCCATCATAATCGGATGGGGCCCATGGGGGTTGGTCGATTACATTTGGTCACCATAAATCTTTCACCATGTAGTTTGAAGCAAGACTCTTCAGCACTCCATCTTTTAAGAAGACTACATGCCCCAATAAGGCATGTGCCTTCCAGATGTAATGTTTTCATATGTCGGTCTGTCCTAATACCAGGTGGAGGGAGTGGGACTCCACTCATGAAATCTGCCAGTGTTATTTTAACAAGGTCATACAATGCTTTACAAGGAAACCCTGTTTTGGTTCAATTGCTCCCAGCCCTTGGTATCATTGCCTTTGCTGTTTGCGGGCTTGAGCCACTCCTTCGTCTCAGCAGGATTTTGTTCCTTCAAAGAACTGACAGTAGTTGGAAGAAAAGTAGTTCGCGATATATTATGACATCGTATTTTCAGCCGTTGCTGTTGTGGACTGGAGCAATGCTCGTATGCAGGGCATTAGATCCACTAGTCCTACCATCTGAGACCAGCCAGGTTGTGAAGCAACGGCTGCTGAATTTTGTGCGATCGTTGTCAACAGTGATTTCATTTGCTTACTGTTTATCAAGCTTAATTCAACAAGCACAAAAATTCTTTCTGGAGGCAAATGACTCCAGTGGTGCAAGAAATATGGGCCTTGATTTTGCTGGGAAGGCAGTATATACTGCTGTATGGGTTGCTGCTGTGTCATTGTTCATGGAGTTGCTAGGTTTCTCCACACAGAGGTGGTTGACTGCTGGTGGTTTGGGTACCGTATTGCTCACTCTTGCTGGTCGTGAGATATTTACAAACTTTCTTTCAAGCATAATGATTCATGCAACTCGTCCATTTATTGTAAATGAGTGGATTCAAACAAAGATTGAAGGATATGAGGTTTCTGGCACAGTCGAGCACGTAGGCTGGTGGTCACCAACCATTGTGAGAGGTGATGATCGGGAGGCAGTTCATATTCCTAATCACAAGTTCACCGTAAATGTTGTGAGAAATTTGAGCCAGAAATCTCATTGGCGTATCAAGAATTACATTGCTATCAGTCACTTGGATGTTAACAAAATTAACAATATTGTAGCTGATATGCGCAAGGTTTTGTCAAAAAATCCTCAAGTGGAGCAGCAAAGATTGCATAGAAGGGTGTTTCTGGAGAGTGTCAATCCTGAAAATCAGGCTCTTATGATATTAATATCTTGCTTTGTGAAAACTTCTCATTTTGAAGAGTACCTTTGTGTTAAGGAGGCAATCCTTTTAGATCTTCTCAGAGTTGTCAGTCATCATCGAGCCCGGCTAGCCACTCCCATCCGCACAGTTCAGAAAATATACGGGGAGGCTGACTCAGAAAATATACCTTTTGGTGACACCGTTTTCACTCAATCCAGAGCAGCAAATCGCCCATTCCTACTGATAGAACCACCATATAAAGTTAATGGTGAAGATAAAGCTAAGCCTTCAACTCGTTCGACTCGTCCAAATGAGGAAAAAGATTCCAAGATTGAAACAATGGCATATGACATCAAAGGGGATGAGAATTTTGCAGCGACATCAACCTCCTCACCTGATGCAAACTCCAAGGATAAATTCAAGTCAAATTCTGAACCCCAAATCCAGAATACGAGTTCTGATAGTTCAGCTGCCAAAACCATACAGCCTAAAAAGGAAAATGCTGGAGATGCAGGAAAGGGAAATACAGTTCCTGCATCTAAAAGCCTTGCACAAAGTGCTGTACCTGAAACTTCTCCTGTTACTACCCCGGAGACCATTTCCGCCACTTCTTCACAGTCAAAGCAAGATGAAGAGAAATCTTCTGTCTCATCGTCATCAGTCAGGCCTTCCTTGGAAGAGAACATTCTTCTTGGGGTTGCCCTAGAAGGCTCAAAACGAACTCTTCCAATTGAAGACGAAATGACTCCATCTCCTATGCCTGCAGAGTCACAAGAATTTGCTGTCCAAAGGAACGGGAGTGGACCTCCTGCTAGCAAGGATAAGAAGGATAACCAGATGTCTTCATTTCCAACTGTGGAAGAATACAAACGTGAGTTTCTAACTATTTGCGATTGCTCTGTTCCCGAGGGCGAGGATTTTTTCCTTTTGTTTCCTCCCACGTCTTTGGAATATTATCAGCATCAGACATCAGCGTATCACGCGGGTCAAATAGTCAAAGGTTAA 2232 0.4328 MVCSGSIRLSRDVRLSSDAGFCSFHHNRMGPMGVGRLHLVTINLSPCSLKQDSSALHLLRRLHAPIRHVPSRCNVFICRSVLIPGGGSGTPLMKSASVILTRSYNALQGNPVLVQLLPALGIIAFAVCGLEPLLRLSRILFLQRTDSSWKKSSSRYIMTSYFQPLLLWTGAMLVCRALDPLVLPSETSQVVKQRLLNFVRSLSTVISFAYCLSSLIQQAQKFFLEANDSSGARNMGLDFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSIMIHATRPFIVNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGDDREAVHIPNHKFTVNVVRNLSQKSHWRIKNYIAISHLDVNKINNIVADMRKVLSKNPQVEQQRLHRRVFLESVNPENQALMILISCFVKTSHFEEYLCVKEAILLDLLRVVSHHRARLATPIRTVQKIYGEADSENIPFGDTVFTQSRAANRPFLLIEPPYKVNGEDKAKPSTRSTRPNEEKDSKIETMAYDIKGDENFAATSTSSPDANSKDKFKSNSEPQIQNTSSDSSAAKTIQPKKENAGDAGKGNTVPASKSLAQSAVPETSPVTTPETISATSSQSKQDEEKSSVSSSSVRPSLEENILLGVALEGSKRTLPIEDEMTPSPMPAESQEFAVQRNGSGPPASKDKKDNQMSSFPTVEEYKREFLTICDCSVPEGEDFFLLFPPTSLEYYQHQTSAYHAGQIVKG 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01306 743 Pfam Mechanosensitive ion channel 242 449 IPR006685 GO:0016020|GO:0055085
Cca03g01306 743 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 1 691 - -
Cca03g01306 743 MobiDBLite consensus disorder prediction 494 632 - -
Cca03g01306 743 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 691 IPR045042 -
Cca03g01306 743 MobiDBLite consensus disorder prediction 497 526 - -
Cca03g01306 743 Gene3D - 301 356 IPR023408 -
Cca03g01306 743 MobiDBLite consensus disorder prediction 587 632 - -
Cca03g01306 743 Gene3D - 164 299 - -
Cca03g01306 743 MobiDBLite consensus disorder prediction 646 693 - -
Cca03g01306 743 MobiDBLite consensus disorder prediction 532 571 - -
Cca03g01306 743 SUPERFAMILY Sm-like ribonucleoproteins 285 355 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01306 Cca-Chr3 30788452 30799391 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01306 1 671 Mechanosensitive Ion Channel Family AT1G58200 55.848 0.0 752
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01306 K22047 - gmx:100796022 1148.27