Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01296 ATGCCGGAGATGAAGACCAAAAATGCCCCTTTCACCGAAGAAGATGCCGCCACACTCATACAAAGGTTCTCTTATTTCCTTTTGATTTCTTCTTCTAATTTCGCGTCGGAGCTTCAACGATTAGGGGTATTGCGCAGGTACGACGCAACTACTGTGTTCACTCTACTTCAGGAAGTGGCGCATCACCCTCACCCGAAGATCGATTGGAAAGAGTTGGTGAAGAAGAGCGCCACCGGGATTTCCAATGCGAGGGAATACCAAATGCTGTGGCGCCACTTGGCGTATCGCCATTCCTTGCCTGAAAGTTTCGAAGATGGAACTGAACCTTTGGATGATGATAGTGACCTAGAGTTTGAGGTAGAAACATTACCCCCTGTAAGTGTAGAATCTGCATCAGAGGCTGCTGCATGTGTGAAGGTAATGATTGCTTCTCGTACACTAAGTGAATCTGCCCCTAGTAGCTCAACAATCGAGGCTCCATTGAATATCAATGTTCCAGTTTGCCATTCATCTAGAACTCCTATTGAAAGTTCACAGCCCTCTAATTTGATGCAAGGAACAAGTATTATTTTTCCAGTTACTGTTCTTAGACAGACACTCCCACCCTCTGCATCATCAACAGATGGTGCAGAAACCAAGGGATTTATTAGTGGTAACATGGCTTCCAAAAGAAAGAGAAAGGCATGGTCAGAGGAAGAGGACATGCAGCTACGAGCTGCTGTTCAGAGATGGGGTGAAGGGAATTGGGCAACCATGGCAAAAGGAGACAACTTTCCTATTAAGAGAAGTCCTACACAGTTGGCTCAGCTAGAAGTATTAGCAAGTGGTCATGTTCATCAAGATGGTAAAAAGAAGTGTAAGAAAGAAAAGACAGCAAGGGTTTAA 885 0.4486 MPEMKTKNAPFTEEDAATLIQRFSYFLLISSSNFASELQRLGVLRRYDATTVFTLLQEVAHHPHPKIDWKELVKKSATGISNAREYQMLWRHLAYRHSLPESFEDGTEPLDDDSDLEFEVETLPPVSVESASEAAACVKVMIASRTLSESAPSSSTIEAPLNINVPVCHSSRTPIESSQPSNLMQGTSIIFPVTVLRQTLPPSASSTDGAETKGFISGNMASKRKRKAWSEEEDMQLRAAVQRWGEGNWATMAKGDNFPIKRSPTQLAQLEVLASGHVHQDGKKKCKKEKTARV 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01296 294 SUPERFAMILY Homeodomain-like 224 268 IPR009057 -
Cca03g01296 294 Gene3D - 218 270 - -
Cca03g01296 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 221 254 IPR017930 -
Cca03g01296 294 SMART sant 225 275 IPR001005 -
Cca03g01296 294 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 4 269 - -
Cca03g01296 294 CDD SANT_TRF 227 267 - -
Cca03g01296 294 Pfam Myb-like DNA-binding domain 226 267 IPR001005 -
Cca03g01296 294 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 4 269 - -
Cca03g01296 294 ProSiteProfiles Myb-like domain profile. 221 266 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01296 Cca-Chr3 30647107 30649888 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca03g01296 Myb_DNA-binding 3.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01296 - - gmx:100805773 402.519