Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01292 ATGCCTCACAGAGCCACGTACTTTTTCCCGCGTCAGTTTCCGGAGCGAGGTTTGGATGAGTCTTCGAAACAGCTATTAGATCACGAGAAAAAGAAGATCGTCAACTCCATCAAGCACGATAGCGACACTCCGAAGAAGCCGCTTCCGACTCCGACCAAAGACGACAACCACTCCGCCGTCTCCGACCTCTTCGCCGGCGGCGGAGACAAGTTACGGACCAAGCACAAGCCAATCGCCGCCTTCTGCGACTGGCTCATCGACAAGAAAGTAAGCCACTCTGGCCACCACCACCACTGCAACGGCTACCGCGACCTCCTTCTTCCGCCGGAGAAGGATGGCGCCGTCGACCAGAGCTTCGATCGGCAGGTTTCGCTGCCGAGGCTTTCGAGCGGGAGCAGCTATGCAGGGAGCTTGTTTTCCAGCGACATTAAGGAAGAAACTTCGTCGTCTCGCGCGCTCACTGTTATCCCTGCGCACAaggatgaggagggagtagaggaggaggaACAAAGCAAGGAAAAGTTGGCGAAGAAGTCCAAAGAAAGCTACATCTTGCAACTCACGTTAGCGAAGAGGCTCACATGTTTGGCTAGCCTTGTCACCGAACCGGTTCTCAGTCAAGGAACCGAAACCTGGGATGCCGAATCCGTTTCTTATCGCCTATGGGTGAGTGGGTGTTTATCGTATACGGACAAGATATCTGATGGGTTTTATAACATATTGGGGATGAATCCGTATCTGTGGGTGATGTGTAATGATGTGGAGGAAGGTAGAAGGATACCTACTTTGATGGCGCTTAAAGCGGTTGAGCCCAGCGAGACTTGTATGGAGGTGGTGCTGGTTGATAGACACGAGGACTCTCGCTTGAAGCTGCTTCAGGATAAAGCGCAAGAGTTGTATTGTGCTTCTGAGAATACGTTGGTGTTGGTGGAACAGCTAGGGAAACTTGTTGCCATTTATATGGGTGGTAAGTTCCCGGTGGAGCAAGGGGATCTCCATAAGCGCTGGAAGTTGGTTAGTAAAAAGTTGAGGAATTTTCACAAGTGTGTTGTGCTTCCTATTGGCAGCCTGTCTTCTGGACTTTGTAGGCATCGGGCAATTCTTTTTAAGCCTGAATGGATGGCTCCAGAATTTCTTCGTGGAGAACCCTCCAATGAGAAATCTGATGTATACAGTTTTGGAGTTATACTGTGGGAACTTGTGACCATGCAACAACCATGGAGTGGACTTAGTCCTGCCCAGGTGGTTGGAGCTGTGGCTTTTCAGAACAGAAGGCTTGCTATTCCTCCAAACATCTCCCCTGCATTGGCCTCCCTCATGGAATCTTGTTGGGCCGATGACCCTAGTGAACGCCCATCTTTTGCTGGCATTGTTGACTCACTAAAGAAGCTGGTAAAATCTCCAGCAGAAGTGATAAAGATGGGGGATACATAA 1434 0.493 MPHRATYFFPRQFPERGLDESSKQLLDHEKKKIVNSIKHDSDTPKKPLPTPTKDDNHSAVSDLFAGGGDKLRTKHKPIAAFCDWLIDKKVSHSGHHHHCNGYRDLLLPPEKDGAVDQSFDRQVSLPRLSSGSSYAGSLFSSDIKEETSSSRALTVIPAHKDEEGVEEEEQSKEKLAKKSKESYILQLTLAKRLTCLASLVTEPVLSQGTETWDAESVSYRLWVSGCLSYTDKISDGFYNILGMNPYLWVMCNDVEEGRRIPTLMALKAVEPSETCMEVVLVDRHEDSRLKLLQDKAQELYCASENTLVLVEQLGKLVAIYMGGKFPVEQGDLHKRWKLVSKKLRNFHKCVVLPIGSLSSGLCRHRAILFKPEWMAPEFLRGEPSNEKSDVYSFGVILWELVTMQQPWSGLSPAQVVGAVAFQNRRLAIPPNISPALASLMESCWADDPSERPSFAGIVDSLKKLVKSPAEVIKMGDT 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01292 477 Gene3D Transferase(Phosphotransferase) domain 1 344 475 - -
Cca03g01292 477 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 371 475 - -
Cca03g01292 477 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 151 370 - -
Cca03g01292 477 PANTHER SERINE/THREONINE-PROTEIN KINASE CTR1-LIKE ISOFORM X1 371 475 - -
Cca03g01292 477 PANTHER SERINE/THREONINE-PROTEIN KINASE CTR1-LIKE ISOFORM X1 151 370 - -
Cca03g01292 477 MobiDBLite consensus disorder prediction 31 61 - -
Cca03g01292 477 ProSiteProfiles Protein kinase domain profile. 119 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01292 477 SUPERFAMILY Protein kinase-like (PK-like) 363 460 IPR011009 -
Cca03g01292 477 Pfam Protein tyrosine and serine/threonine kinase 369 461 IPR001245 GO:0004672|GO:0006468
Cca03g01292 477 Pfam Ethylene-responsive protein kinase Le-CTR1 214 370 - -
Cca03g01292 477 MobiDBLite consensus disorder prediction 31 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01292 Cca-Chr3 30608679 30615149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01292 360 475 MAP Kinase Kinase Kinase AT4G24480 71.774 5.04e-55 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Cca03g01292 EDR1 7.8e-54 CL0125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01292 - - ccaj:109796506 711.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01141 05 28698033 28706141 Cca03g01292 03 30608679 30615149 PCT
Cca05g01899 05 38835114 38841649 Cca03g01292 03 30608679 30615149 PCT