Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01290 ATGTACGGTCCCATGAGCCAGATCGTCCCCGCCGAAGACAACGACGGCGCCGCCTCCAACCACCACATTCATTACAGTTCCCACACCATCGAAGACGGTGGCGCCGGAGCCGAAGACGTTTCCGCTGACTCCTACGCTGCGCCCCCTGACCTCACTATCCATGACTCTAGCCAGCTCACGCTCTCGTTTCGTGGCCATGTCTATGTCTTCGACACCGTTACACCTGATAAGGTTCAATCAGTGTTTTTGCTGTTGGGAGGAAGTGAACTAACTTCGGGCTCGCAATGTGTGGCGATGTCGCCCCAAAATCAGACGGGTGCGGCAGAATATCCTGTGAGATGTAGTCTTCCACAGCGAGCAGCATCATTAAGTAGGTTCCGTCAGAAGAGGAAAGAGCGGTGCTTTGATAAGAAAGTTAGATATAGTGTACGTCAAGAAGTTGCACTCAGGATGCATCGGAATAAGGGTCAGTTTACTTCATCAAAGAAACAAGATGGAACTAATAGTTGGGGTTCAGATCAAGAGTCAGGGCAGGATCTTGTTCAATCAGAAACATTGTGCACACATTGTGGAACAAGTTCAAAATCCACTCCTATGATGCGAAGGGGGCCTTCTGGTCCAAGGTCACTATGCAATGCTTGTGGGCTTTTTTGGGCAAATAGGGGCGCTTTGAGGGATCTTTCTAAGAGAAATCAGGAACACTCTCTTGCACTCCCTGAGCAAGTTGATGAAGGTAGTAATAATGACTTGGACTGTCAGATTGTTATCCCTGCACAGCATAACAATCTTGTTAACGATAACAAACCTCTGGTATCTGATCGTTGA 825 0.4848 MYGPMSQIVPAEDNDGAASNHHIHYSSHTIEDGGAGAEDVSADSYAAPPDLTIHDSSQLTLSFRGHVYVFDTVTPDKVQSVFLLLGGSELTSGSQCVAMSPQNQTGAAEYPVRCSLPQRAASLSRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSSKKQDGTNSWGSDQESGQDLVQSETLCTHCGTSSKSTPMMRRGPSGPRSLCNACGLFWANRGALRDLSKRNQEHSLALPEQVDEGSNNDLDCQIVIPAQHNNLVNDNKPLVSDR 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01290 274 ProSiteProfiles CCT domain profile. 119 161 IPR010402 GO:0005515
Cca03g01290 274 MobiDBLite consensus disorder prediction 1 20 - -
Cca03g01290 274 CDD ZnF_GATA 187 232 IPR000679 GO:0006355|GO:0043565
Cca03g01290 274 Gene3D - 179 236 IPR013088 GO:0006355|GO:0008270
Cca03g01290 274 MobiDBLite consensus disorder prediction 152 178 - -
Cca03g01290 274 Pfam tify domain 56 86 IPR010399 -
Cca03g01290 274 ProSitePatterns GATA-type zinc finger domain. 187 214 IPR000679 GO:0006355|GO:0043565
Cca03g01290 274 ProSiteProfiles GATA-type zinc finger domain profile. 181 241 IPR000679 GO:0006355|GO:0043565
Cca03g01290 274 SMART tify_2 52 87 IPR010399 -
Cca03g01290 274 Pfam CCT motif 119 161 IPR010402 GO:0005515
Cca03g01290 274 PANTHER GATA TRANSCRIPTION FACTOR 28 15 255 IPR045280 GO:0006355
Cca03g01290 274 SMART GATA_3 181 234 IPR000679 GO:0006355|GO:0043565
Cca03g01290 274 Pfam GATA zinc finger 187 222 IPR000679 GO:0006355|GO:0043565
Cca03g01290 274 PANTHER GATA TRANSCRIPTION FACTOR 25 15 255 - -
Cca03g01290 274 MobiDBLite consensus disorder prediction 160 178 - -
Cca03g01290 274 ProSiteProfiles Tify domain profile. 52 87 IPR010399 -
Cca03g01290 274 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 184 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01290 Cca-Chr3 30498689 30503432 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01290 56 273 Tify Gene Family AT4G24470 57.203 7.34e-85 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Cca03g01290 CCT 3.3e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01290 - - pvu:PHAVU_009G035400g 453.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01142 05 28740360 28746860 Cca03g01290 03 30498689 30503432 PCT