Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01289 GTGCAAGCCGTATTGCTGCTCTTGGGAGGACGTGATGTGCAGGCAGGCATGCCTACAGTTGAACAACCAATTGATCAGAGTAACAGAGGCATGGGTGATACTCCAAAGCGTTCAAACCTTTCACGAAGAATAGCATCCTTGGTCAGGTTCCGTGAGAAACGCAAGGAAAGATGTTTTGACAAGAAAATTAGGTATTCCGTAAGAAAAGAGGTGGCACAGAGGATGCATAGGAAGAATGGGCAGTTTGCATCCCTGAAGGAAAACCCAGGTTCATCTAATTGGGATTCTGCACAGAGTACTGGTCAAGATGGCACTCTTCATTCTGAATCAGTACGTAGATGTCACCATTGTGGTGTCAGTGAAAATAATACTCCTGCAATGCGTCGTGGGCCAGCTGGACCAAGGACTTTATGCAATGCATGTGGCCTTATGTGGGCTAACAAGGGCACACTCAGAGATCTTAGTAAGGGAGGAAGAAATCTTACTGTTGAGCAAAGTGATCTGGACACTCCTATTGATGTCAAGCCTACTGCTGTTCTTGAAGAGGAATTACCTATCACCCATGATGAGCAAGGTAGTTCTGAAGATCCTTCCAAGTCAAACACTGCTGATGGTTCTAGTAATCGTGTTGTAAACCCCAGTGATGAGGAATTGCCTGAAACTGCACAACACTTTACGAATGCTCTGCCACTGGGAATTGGTCATTCTTCAACCGATGATAATGAACAGGAACCTCTGGTCGAGATTTCTAATCCTTCAGATACAGATATTGACATTCCAGGAAACTTTGATTAG 795 0.4478 VQAVLLLLGGRDVQAGMPTVEQPIDQSNRGMGDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYSVRKEVAQRMHRKNGQFASLKENPGSSNWDSAQSTGQDGTLHSESVRRCHHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNLTVEQSDLDTPIDVKPTAVLEEELPITHDEQGSSEDPSKSNTADGSSNRVVNPSDEELPETAQHFTNALPLGIGHSSTDDNEQEPLVEISNPSDTDIDIPGNFD 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01289 264 MobiDBLite consensus disorder prediction 196 214 - -
Cca03g01289 264 Gene3D - 108 161 IPR013088 GO:0006355|GO:0008270
Cca03g01289 264 CDD ZnF_GATA 113 157 IPR000679 GO:0006355|GO:0043565
Cca03g01289 264 Pfam GATA zinc finger 114 150 IPR000679 GO:0006355|GO:0043565
Cca03g01289 264 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 1 264 - -
Cca03g01289 264 Pfam CCT motif 43 84 IPR010402 GO:0005515
Cca03g01289 264 MobiDBLite consensus disorder prediction 182 264 - -
Cca03g01289 264 MobiDBLite consensus disorder prediction 78 109 - -
Cca03g01289 264 ProSiteProfiles GATA-type zinc finger domain profile. 108 167 IPR000679 GO:0006355|GO:0043565
Cca03g01289 264 MobiDBLite consensus disorder prediction 230 250 - -
Cca03g01289 264 PANTHER GATA TRANSCRIPTION FACTOR 28 1 264 IPR045280 GO:0006355
Cca03g01289 264 ProSitePatterns GATA-type zinc finger domain. 114 141 IPR000679 GO:0006355|GO:0043565
Cca03g01289 264 ProSiteProfiles CCT domain profile. 43 85 IPR010402 GO:0005515
Cca03g01289 264 MobiDBLite consensus disorder prediction 84 107 - -
Cca03g01289 264 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 108 158 - -
Cca03g01289 264 SMART GATA_3 108 161 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01289 Cca-Chr3 30480662 30494638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01289 1 156 Tify Gene Family AT1G51600 57.927 3.76e-55 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Cca03g01289 CCT 6.8e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01289 - - ccaj:109801882 539.265