Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01281 ATGAGGAAGAAAAGGAAAGGAAGCGAGACTGATGCGACTGGTGATCTGCCGGTTGTTTTGGCTCCTAATAATCATGGCTCTGCTTCGTCAAATTTGAAGTCCCATTACTCGCTAGAAGATTGTTTTAGGTTGAAGAAGAGGTGTAAGGAGGATGCTGACACAGAGCCAGCTGCTTCCTTTAAAAGGAGGCTTGCTGGCATTGCTACTGCACCGCTGTGTGGGACGTCGTCTTTGATCACCCCGGGGAGAGGGCTCAAGAGGAAGATAGGTTGCATTGATGTTGCTACCCAAATGGGTAGGAAGAAGAAGATTGAGGATGATTATGTGTCTGGTGAGACCATTGGGCAAGGCAAGTTTGGGTCTGTTTGGCTGTGTCGGTCCAGGGTTAGCGGGGCAGAGTATGCGTGTAAGACCCTGAGGAAGGGGGAGGAGACGGTTCATCGAGAGGTTGAGATAATGCAACACTTGTCTGGACATTCTGGGGTTGTGACACTGCAAGCTGTTTATGAAGAAGCAGAGTGCTTTCATCTTGTCATGGAATTGTGCTCTGGGGGACGGCTCATCGATCAAATGGTTAAAGAAGGTCCATGTTCAGAACAGCGGGCTGCTAATGTGCTCAAGGAAGTGATGTTGGTCATCAAGTATTGCCATGACATGGGAGTTGTGCACAGAGATATCAAACCTGAGAATATTCTGCTCACAGCATCTGGAAAAATAAAGCTTGCAGATTTTGGCCTGGCCATGAGAATTTCAGAAGGTCTGAACTTGACTGGTTTGGCTGGAAGCCCTGCCTATGTTGCCCCAGAAGTATTGTTAGGAAGTTACTCTGAGAAGGTGGATATATGGAGTGCTGGAGTGCTCCTGCATGCTCTGTTGGTAGGCAGTCTTCCATTTCAAGGAGATTCATTGGAAGCAGTTTTTGAGGCTATTAAAACCGTCAAATTAGATTTTCAAAACGGGATGTGGGAATCAATATCTAAACCTGCACGAGACCTTATTGGGAGAATGCTGACAAGGGATATTTCAGCAAGGATATCAGCTGACGAAGTACTTAGGCATCCATGGATATTGTTCTACACGGCACATTCATTGAAGATGCTCCCCGTCAAAACAAAATTGAAGAACCAAATGGGTGCCACATGCCAACAGCTTGCTGTGCCTGAACCAAGATTTGGAGCAAATAGGATAGACAATTACTCACTTAACGAGGGTTCATCCTCTGAAAGTTGCAACTCAGATGATGAGGATGAATGCGTGTTAATTGATGTGCTTGCCTCTGCAATTTCACATGTGAGGATATCTGAACCAAAGAGGAGCAGGTTGTGTGGTCCAACGGGTCCTATAGTTCAGCAAGAATTTACTTTCCCTCAGCACATCACAGTGGACAAAGGTGAATTTTACATGCTGACCAATGTTAAGTTGGCCTGGGTGCCGCTTCCCCTCCAAGGCACTTATTTAGCCTCGTCTCCTCTCCTCTTCGTTTCCTCTCCTAGTCGTCTCTTCCTCCGCGTCTCTTCCTCCGTGCGCCTCCTCTCCTCCGCGGCTCCTCCTCCGCGTTTCCTCGTCTCCTCCGTGCGTGCCTCGTCTCCTCTGTGCGCCTTGCTTCCTCTGCACGCCTCTCCTCCGCGCGTCTCTTTCTCCTCCGCGTCGCCACCTCCGCTATTCTTCTTCTTCGTGCGCGACTCACTTTTGTGCGAACCTGGTTAG 1707 0.4856 MRKKRKGSETDATGDLPVVLAPNNHGSASSNLKSHYSLEDCFRLKKRCKEDADTEPAASFKRRLAGIATAPLCGTSSLITPGRGLKRKIGCIDVATQMGRKKKIEDDYVSGETIGQGKFGSVWLCRSRVSGAEYACKTLRKGEETVHREVEIMQHLSGHSGVVTLQAVYEEAECFHLVMELCSGGRLIDQMVKEGPCSEQRAANVLKEVMLVIKYCHDMGVVHRDIKPENILLTASGKIKLADFGLAMRISEGLNLTGLAGSPAYVAPEVLLGSYSEKVDIWSAGVLLHALLVGSLPFQGDSLEAVFEAIKTVKLDFQNGMWESISKPARDLIGRMLTRDISARISADEVLRHPWILFYTAHSLKMLPVKTKLKNQMGATCQQLAVPEPRFGANRIDNYSLNEGSSSESCNSDDEDECVLIDVLASAISHVRISEPKRSRLCGPTGPIVQQEFTFPQHITVDKGEFYMLTNVKLAWVPLPLQGTYLASSPLLFVSSPSRLFLRVSSSVRLLSSAAPPPRFLVSSVRASSPLCALLPLHASPPRVSFSSASPPPLFFFFVRDSLLCEPG 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01281 568 SUPERFAMILY Protein kinase-like (PK-like) 105 552 IPR011009 -
Cca03g01281 568 PANTHER SERINE/THREONINE-PROTEIN KINASE 25 448 - -
Cca03g01281 568 SMART serkin_6 108 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01281 568 ProSitePatterns Serine/Threonine protein kinases active-site signature. 221 233 IPR008271 GO:0004672|GO:0006468
Cca03g01281 568 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524
Cca03g01281 568 MobiDBLite consensus disorder prediction 1 28 - -
Cca03g01281 568 PANTHER SERINE/THREONINE-PROTEIN KINASE PEPKR2 25 448 - -
Cca03g01281 568 Gene3D Transferase(Phosphotransferase) domain 1 99 403 - -
Cca03g01281 568 CDD STKc_CAMK 107 355 - -
Cca03g01281 568 Pfam Protein kinase domain 108 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01281 568 ProSiteProfiles Protein kinase domain profile. 108 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01281 Cca-Chr3 30341018 30344790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01281 103 356 EF-hand Containing Proteins AT4G35310 43.561 9.39e-73 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Cca03g01281 Pkinase 3.2e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01281 - - gmx:100812729 826.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01281 03 30341018 30344790 Cca03g01281 03 30341018 30344790 ECH
Cca05g01097 05 28072212 28076058 Cca03g01281 03 30341018 30344790 PCT