Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01280 ATGAGAGAGCTTCAAGTATTTGTTTTTTTTTTTTTTAATTCGCAATTTAAAAAGGAAAAAAAAATGGCAGGAGAATCAGTGACGTTAATAGGGTTCTGGGGTAGTCCATTTGTCCTCAGGGTCAAATGGGCTCTTGAACTAAAAGGGATTCAGTACCAATATGTGGAAGAAGATCTCAGCAACAAGAGTGCCATGCTCCTGCAATATAACCCTGTTTACAAGAAGGTGCCGGTTCTTGTGCATGAAGGTAAGCCCCTGGCGGAATCACTAGTGATTCTTGAATATATTGATGAGACCTGGAAGCAAAATCCCCTTCTTCCACAAGATCCCTATGAAAAGGCCAAGGCACGATTCTGGTCAGGATTCGTTGATGAAAAGAACACATGTTATCGTGTTCTTTTTGTCCCCTTGGTAACACACTCGACCTTTCTTATTCTCCGTGTTATGGCCACCTTTTCCAAAGGTGGGGAGGAACAACAGAAAGCAGCACAAGAAGCTCGGGAGAATCTAAAGACCCTTGAAGGTGGGATTGAGGGAAAGCGCTACTTTGGAGGTGAAAAAATAGGCTTCGCTGATATTGCTATTGGCTGGCTTGGATACTGGGTACAAATAGTGGAGGAAATTGTGGGCATAAACCTGATTGATAAAGAGTTGATGGCTAAGCTTGATGCTTGGTTCAATGATTTTCTTGAGCATCCTGTCATCAGAGAAAGCATGCCACCACGTGATAAACTGCTTAACCACAACACGGCCTTCCACAAGGTCTTGACATCTTCATCCACTTGA 786 0.43 MRELQVFVFFFFNSQFKKEKKMAGESVTLIGFWGSPFVLRVKWALELKGIQYQYVEEDLSNKSAMLLQYNPVYKKVPVLVHEGKPLAESLVILEYIDETWKQNPLLPQDPYEKAKARFWSGFVDEKNTCYRVLFVPLVTHSTFLILRVMATFSKGGEEQQKAAQEARENLKTLEGGIEGKRYFGGEKIGFADIAIGWLGYWVQIVEEIVGINLIDKELMAKLDAWFNDFLEHPVIRESMPPRDKLLNHNTAFHKVLTSSST 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01280 261 Pfam Glutathione S-transferase, C-terminal domain 141 233 IPR004046 -
Cca03g01280 261 SUPERFAMILY Thioredoxin-like 26 125 IPR036249 -
Cca03g01280 261 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 109 252 IPR010987 -
Cca03g01280 261 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 25 104 IPR004045 -
Cca03g01280 261 Gene3D Glutaredoxin 21 105 - -
Cca03g01280 261 CDD GST_C_Tau 110 252 IPR045074 GO:0004364|GO:0006749
Cca03g01280 261 Gene3D - 106 260 - -
Cca03g01280 261 SUPERFAMILY GST C-terminal domain-like 98 254 IPR036282 -
Cca03g01280 261 Pfam Glutathione S-transferase, N-terminal domain 26 98 IPR004045 -
Cca03g01280 261 PANTHER - 24 258 - -
Cca03g01280 261 CDD GST_N_Tau 27 100 - -
Cca03g01280 261 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 24 258 IPR045073 -
Cca03g01280 261 SFLD Glutathione Transferase (cytosolic) 23 259 IPR040079 -
Cca03g01280 261 SFLD Main.3: Omega- and Tau-like 23 259 IPR045073 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01280 Cca-Chr3 30335636 30337285 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01280 24 261 Glutathione S-transferase Gene Family AT2G29420 42.017 4.13e-67 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01280 K00799 - gmx:100813267 377.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01280 03 30335636 30337285 Cca03g01280 03 30335636 30337285 ECH