Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01270 ATGACAACGGGGCGGGACAGGGCGAGTTTTACGTTCCCCCGTCTCCGCTCCCGCAAATTTAAACGGCTTCCGCCCCCGTTCTTGATACCTGCCGAGGATAAAATCTGGGTTCCCATTTCTGCCCCTGGCGGGGTTCCGTTGCAACCTTTCGCGCGGTCTGTCACCACTTCAAATGTAAAATCTCAGTCCTCCCTCCAGTTTccgccgccggccgccgcgcagctccccaacgcgctgacgccgccgccgccgGGCAACTTCTCGCGGCTGAAGTTCGACAAGTCGATGGCCATCGTGCTGGTGATCCTGGTGGCGGTGTTCTTCGTCCTGGGATTCCTGTCCGTGTACACGCGGCAGTGCGGCGAGCGAAGGAGCTTCGACCTCTCCCTCCCGATGACGCGGCGCCACCGCGGCCTCGACCGCCAAATCCTGGACACGTTCCCGACCTTCGTCTACTCCGCCGTGAAGAGCCTGAAGATAGGGCGCGCCACGCTGGAATGCGCGGTGTGTCTGAACGAGTTCGAGGAGGACGAAACGCTGCGTTTGATCCCCAAGTGCAGCCACGTGTTCCACGCCGACTGCATCGACGCCTGGCTCGCCACGCACTCCACGTGTCCCGTGTGCCGCGCCAACCTCGTGCCCAAACCCGACGACCCCTCCTTTCACTTACCCGATCTAGAGCAGCCCCAATTAAATAGCCCGACCCGACCCGACGAGGACACGGGGATTGCACCTGCGACTGCGCGTCCGCTTTCGGTTTCTCCGAAGGAGGTGCGGAACCAGCTCGTGAATTCGACGCTGAGTCGCACCACGAGTTGCGGCGTGGACGTGAGGTTCACGCGCGAGAGTAGCGCGAGGAGGGGTTACAGGACAAGAAGTGTGGGGAACAGCCTTAGTCCTCTCGTGAGAGGTGGGTTTTCTCGGACGCGGTCGCCGAAGGATGATGTCGGAGAACGATCTTGGAATCGGTTATTCTCGGGGACAAGGGGTAGTGAGGAATAG 1002 0.5729 MTTGRDRASFTFPRLRSRKFKRLPPPFLIPAEDKIWVPISAPGGVPLQPFARSVTTSNVKSQSSLQFPPPAAAQLPNALTPPPPGNFSRLKFDKSMAIVLVILVAVFFVLGFLSVYTRQCGERRSFDLSLPMTRRHRGLDRQILDTFPTFVYSAVKSLKIGRATLECAVCLNEFEEDETLRLIPKCSHVFHADCIDAWLATHSTCPVCRANLVPKPDDPSFHLPDLEQPQLNSPTRPDEDTGIAPATARPLSVSPKEVRNQLVNSTLSRTTSCGVDVRFTRESSARRGYRTRSVGNSLSPLVRGGFSRTRSPKDDVGERSWNRLFSGTRGSEE 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01270 333 CDD RING-H2_PA-TM-RING 166 209 - -
Cca03g01270 333 ProSiteProfiles Zinc finger RING-type profile. 167 209 IPR001841 -
Cca03g01270 333 PANTHER RING FINGER DOMAIN-CONTAINING 64 296 - -
Cca03g01270 333 SMART ring_2 167 208 IPR001841 -
Cca03g01270 333 MobiDBLite consensus disorder prediction 219 257 - -
Cca03g01270 333 MobiDBLite consensus disorder prediction 289 304 - -
Cca03g01270 333 MobiDBLite consensus disorder prediction 284 333 - -
Cca03g01270 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 214 IPR013083 -
Cca03g01270 333 PANTHER RING-H2 FINGER PROTEIN ATL11 64 296 - -
Cca03g01270 333 SUPERFAMILY RING/U-box 161 218 - -
Cca03g01270 333 Pfam Ring finger domain 166 209 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01270 Cca-Chr3 30168964 30174095 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01270 71 231 Rapid Response to Elicitors AT3G05200 45.455 4.55e-46 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01270 K10664 - gmx:100805815 312.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01270 03 30168964 30174095 Cca03g01270 03 30168964 30174095 ECH
Cca05g01090 05 27896927 27897925 Cca03g01270 03 30168964 30174095 PCT