Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01269 ATGTCTAACCTTAATTACGAAGGGGTTGTTAATTTAGATGATGAGAAGGAAATGAATGTTTCTAATAACAATGCATCAGATGAAGAAAGTAGTGGAAGTGATGTCCGTTTTGGTAATGAGGAAGATGATGCCCATATTGATAGTAATCATAATGAATACAAAAGTTTTATGGATTTGACTGTAGACGACATATTGGGTTTGGAATTTGGTAGTGAACATGATGCATATAAATTTTACTTTGCATATGGTAAATTTCATGGTTTTGGGATTAGGAAGGATGACATTGGTCATGATGCAAATGGCAAAATAGTAATGCGTCAATTTTTATGCAATAAAGGGGGCTTAAGAGACAAAAAACATCTTATGAGAGATGATAGAAAAAAGGGGCATAGGCCTCTTAGTCGTACTAATTGTAAAGCCAAACTTCGTGTACGGCTTGATCCAAAGACAAGTAAATGGAAAGTTGTGTCATTTGAGGAAGGTCACAACCATGACTACAAGAAAAATGTAAATTTTCGACGGAACATTTCCGACGGATATGGATCCGTCAAAAATTTCCGATGGATTTATATTTCCGTCAGAAATTTCTGA 591 0.3503 MSNLNYEGVVNLDDEKEMNVSNNNASDEESSGSDVRFGNEEDDAHIDSNHNEYKSFMDLTVDDILGLEFGSEHDAYKFYFAYGKFHGFGIRKDDIGHDANGKIVMRQFLCNKGGLRDKKHLMRDDRKKGHRPLSRTNCKAKLRVRLDPKTSKWKVVSFEEGHNHDYKKNVNFRRNISDGYGSVKNFRWIYISVRNF 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01269 196 MobiDBLite consensus disorder prediction 13 44 - -
Cca03g01269 196 Pfam FAR1 DNA-binding domain 77 166 IPR004330 -
Cca03g01269 196 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 15 166 - -
Cca03g01269 196 MobiDBLite consensus disorder prediction 16 32 - -
Cca03g01269 196 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 15 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01269 Cca-Chr3 30156047 30156637 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Cca03g01269 FAR1 6.8e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01269 - - ccaj:109794460 324.324