Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01267 ATGGCACTAGAGGCTGTGGTTTTCCCACAGGATCCATTTGGATATGGTTGTAAGGACTATTTGTACTCCTTGGTTGGAGCAACAGCCAACTACGCTTTCCAAGCGCCAGAACAAGAGAAAGTGGTGTTAGGAATCATcaacaacaacaacaacaacaacaacaTACAGCATCATGCAAACTGGGATTCTCATTCTCACTCCTCCCCTGAACCACCTTCTTCCTCCAGCGCCGCCGCCACCAGCACGAGCCGCCGCAAACGACGTCGCACCAAGAGCGCCAAAAACAAGGAGGAAATCGAGAACCAGAGGATGACCCACATTGCAGTGGAACGCAACCGCCGAAAACAGATGAATGAGTACTTGGCCGTGCTTCGCTCCTTGATGCCTTCTTCTTATGTTCAAAGGGGTGATCAGGCGTCTATAATTGGAGGTGCGATTAACTTTGTGAAGGAGTTGGAGCAGCTTTTGCAGTCGATGGAGGGTCAGAAGAGAAGGAAGGAGGGGCAAGTGCAGGAGGATGTTGGGCCAAATGGGTCACCCTTTGCTGAGTTTTTCACGTTTCCTCAATACACGACGCGTGGCACGCAGCTAGCAGATATTGAAGTCACCATGGTCGATAGCCATGCCAACATCAAAATCCTCTCAAAGAAACAACACGCTCACCTTATGAAGCTCGTTCTTGGTCTTCAGACTCTCAGCCTCAGTATTCTCCACCTTAATGTTACCACTCTCCACGATACGGTCCTTTACTCAATTAGCGTCAAGGTAGAGGAGGGGTGTCAGCTGAACACGGTGGATGAAATTGCGGGTGCAGTGAATCAACTATTACGCACAATCCAACAACTGAATTAA 852 0.4789 MALEAVVFPQDPFGYGCKDYLYSLVGATANYAFQAPEQEKVVLGIINNNNNNNNIQHHANWDSHSHSSPEPPSSSSAAATSTSRRKRRRTKSAKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPSSYVQRGDQASIIGGAINFVKELEQLLQSMEGQKRRKEGQVQEDVGPNGSPFAEFFTFPQYTTRGTQLADIEVTMVDSHANIKILSKKQHAHLMKLVLGLQTLSLSILHLNVTTLHDTVLYSISVKVEEGCQLNTVDEIAGAVNQLLRTIQQLN 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01267 283 MobiDBLite consensus disorder prediction 54 102 - -
Cca03g01267 283 Coils Coil 149 172 - -
Cca03g01267 283 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 101 170 IPR036638 GO:0046983
Cca03g01267 283 MobiDBLite consensus disorder prediction 54 81 - -
Cca03g01267 283 SMART finulus 107 158 IPR011598 GO:0046983
Cca03g01267 283 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 101 152 IPR011598 GO:0046983
Cca03g01267 283 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 281 - -
Cca03g01267 283 CDD bHLH_AtFAMA_like 104 167 - -
Cca03g01267 283 Gene3D - 91 174 IPR036638 GO:0046983
Cca03g01267 283 PANTHER MAX DIMERIZATION, MAD 1 281 - -
Cca03g01267 283 Pfam Helix-loop-helix DNA-binding domain 102 153 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01267 Cca-Chr3 30066309 30067916 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01267 1 256 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G22490 50.542 1.92e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca03g01267 HLH 3.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01267 - - gmx:100789380 369.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01267 03 30066309 30067916 Cca03g01267 03 30066309 30067916 ECH
Cca05g01087 05 27861660 27864911 Cca03g01267 03 30066309 30067916 PCT