Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01265 ATGATGGCGCTACTACGTCTTGCCTGCTTAACTTCACCCCATTCCCAATCCACCCCTTTCCCTTTCCTTGGGAGCACACCCATTTCCCAATCCATCAATACCAACTCTTACTTCCGCTTTCCGCGCCTATCCCTCGTTACAACCAAACAAACCCTTAACCCCATTCTCCCACTCGCCACCGATTCCCAACAACAAACCCACGAAACCGCTCAACAAGAATTCTCTCCAACCAGGTTGCTCGCTCAGAACGTGCCCTGGACAAGCACCCCCGAAGACATTCGCTCCTTGTTCGAGAAACATGGCAAAGTCCTCGAAGTCCAGCTTTCAATGTATAAGAAAAACAGAAACCGGGGTTTGGCCTTCGTCGAAATGGCTTCCCCCCAAGAGGCTCTTGCGGCGCTCAATAACCTCGAATCGTATGAGTTTGAGGGACGTGTGATGAAAGTGAATTATGCACGACCAAAAAAGATCAAAACACCGCCGCCTGTGAAACCAAAGCTTCCGGTGACATTTAACTTGTTTGTTGCAAACTTGTCCTATGAAGCGAGGTCCAAAGATCTCAGGGAGTTTTTTAATTCGGGAACTGGTAAAGTTGTTTCTGCTGAAGTTGTGTTTAATGAGAATCCTAGGAAGCCCTCAGGTTATGGATTTGTGTCCTTCAAGTCCAAGAAAGAAGCTGAAGCTGCTCTTTCTGAGTTCCAAGGAAAGGAATTTATGGGAAGGCCAATCAGGGTGGATCGCAGTCGGCGATTTGCTCAACAACTAGTGGCGAGGAGTGCAAAGTCTGAAGATACATCTCCTGAGTTGAGTGGGAGTGCAAAGTCTGAAGATACATCTTCTGAGTTGAGTGGGAGTGCCACGTCTGAAGATGCATCTCCTGAGTTGAGCGTGAATGGGGCAGAAGCTGACAAAGCTGATTGA 921 0.481 MMALLRLACLTSPHSQSTPFPFLGSTPISQSINTNSYFRFPRLSLVTTKQTLNPILPLATDSQQQTHETAQQEFSPTRLLAQNVPWTSTPEDIRSLFEKHGKVLEVQLSMYKKNRNRGLAFVEMASPQEALAALNNLESYEFEGRVMKVNYARPKKIKTPPPVKPKLPVTFNLFVANLSYEARSKDLREFFNSGTGKVVSAEVVFNENPRKPSGYGFVSFKSKKEAEAALSEFQGKEFMGRPIRVDRSRRFAQQLVARSAKSEDTSPELSGSAKSEDTSSELSGSATSEDASPELSVNGAEADKAD 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01265 306 Gene3D - 160 285 IPR012677 -
Cca03g01265 306 SUPERFAMILY RNA-binding domain, RBD 60 162 IPR035979 GO:0003676
Cca03g01265 306 MobiDBLite consensus disorder prediction 258 294 - -
Cca03g01265 306 CDD RRM_SF 173 246 - -
Cca03g01265 306 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 173 244 IPR000504 GO:0003723
Cca03g01265 306 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 148 IPR000504 GO:0003723
Cca03g01265 306 MobiDBLite consensus disorder prediction 255 306 - -
Cca03g01265 306 PANTHER OS08G0483200 PROTEIN 3 278 - -
Cca03g01265 306 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 3 278 - -
Cca03g01265 306 SMART rrm1_1 78 150 IPR000504 GO:0003723
Cca03g01265 306 SMART rrm1_1 172 246 IPR000504 GO:0003723
Cca03g01265 306 Gene3D - 56 159 IPR012677 -
Cca03g01265 306 SUPERFAMILY RNA-binding domain, RBD 167 253 IPR035979 GO:0003676
Cca03g01265 306 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 171 250 IPR000504 GO:0003723
Cca03g01265 306 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 77 154 IPR000504 GO:0003723
Cca03g01265 306 CDD RRM_SF 83 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01265 Cca-Chr3 30037937 30040169 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01265 77 258 Eukaryotic Initiation Factors Gene Family AT3G16380 30.303 1.03e-15 75.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01265 03 30037937 30040169 Cca03g01265 03 30037937 30040169 ECH