Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01255 ATGGCGAGCAGAAGCAATATCAAAGAAAGCATTGGCAAGCCAATAAGATGCAAAGCTGCAATATGCAGAAAAGCAGGGGAACCTCTTATAATAGAGGAAGTTGAGTTGGATCCACCAAAGGCCTGGGAGGTCCGGATCAAGATTTTATGTACAACTCTGTGCCACTCTGATGTAAGCATGTGGAAAATGGATTCGGGGCCATTGGTTAAATTTCCAAGGATTTTCGGACACGAAGCTGTGGGAGTAGTGGAGAGCGTGGGGGAGCATGTGGAAGAGGTGAAAGAGGGGGACTTGGTGGTGCCAGTGTTCTTAGCAAACTGTGGAGAATGCAGTGACTGCAAGAGCCCAAAGAGTAACCAGTGCACCAAATTCGGGAACGTTTATACTGATAAAATGCCGAGAGATGGAACGAGCAGGTTCAGGGACATGAAAGGAGAAGTGGTGCACCATTACTTGCATGTTAGCAGCTTCTCTGAGTACACGGTGGTGGATGTGACCCATGTTGTCAAAATTACCCATGACCTTCCTGTTGATAAAGCTTGCTTGCTTAGTTGCGGAGTTTCCACAGGGATTGGGGCGGTATGGAAGGTTGCTGACGTAGAAGAAGGATCTACAGTGGCTATTTTTGGGCTTGGTACCGTGGGCATGGCTGTTGCTGTAGCAGCAAAGCAACGAGGGGCGTCAAAGATCATTGGCATCGATCTGAATCCCGAAAAATTTGAAATAGGAAAAAGATTTGGAATCACTGATTTTGTGAATCCTTCCGATTGCAAAGAGAAAGAGAAGTCCGTGAGCGAGGTGATTAAGGAGATGACGGATGGAGGTGCTGGTTATTGCTTCGAGTGCATAGGCTTGGCTTCTTTAATGGCTGACGCTTTTAATAGCAGTCGAGATGGTTGGGGAAAGACAATTATATTGGGAGTGGACATGCACGGCTCGCCACTGTCTCTAAGCCCTTATGCCCTACTGAGAGGAAAAACTGTAACTGGATCATTTTTTGGAGGCATCAAACCCAAAATTGATGTTCCCTTCCTTGCCAAGACGTATTTAGACAAACTTAACATAGATGACTTCATATCGCATGAAGTGGGGCTTGAGGACATCAACAAAGCTTTTGACTATCTCCTGGAAGGAAAGAGCCTTCGCTGCATTATAAGGATGAATCACTAA 1170 0.4598 MASRSNIKESIGKPIRCKAAICRKAGEPLIIEEVELDPPKAWEVRIKILCTTLCHSDVSMWKMDSGPLVKFPRIFGHEAVGVVESVGEHVEEVKEGDLVVPVFLANCGECSDCKSPKSNQCTKFGNVYTDKMPRDGTSRFRDMKGEVVHHYLHVSSFSEYTVVDVTHVVKITHDLPVDKACLLSCGVSTGIGAVWKVADVEEGSTVAIFGLGTVGMAVAVAAKQRGASKIIGIDLNPEKFEIGKRFGITDFVNPSDCKEKEKSVSEVIKEMTDGGAGYCFECIGLASLMADAFNSSRDGWGKTIILGVDMHGSPLSLSPYALLRGKTVTGSFFGGIKPKIDVPFLAKTYLDKLNIDDFISHEVGLEDINKAFDYLLEGKSLRCIIRMNH 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01255 389 Gene3D - 21 383 - -
Cca03g01255 389 PANTHER ALCOHOL DEHYDROGENASE-LIKE 2 8 387 - -
Cca03g01255 389 Pfam Zinc-binding dehydrogenase 214 336 IPR013149 -
Cca03g01255 389 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 76 90 IPR002328 GO:0008270|GO:0016491
Cca03g01255 389 SUPERFAMILY GroES-like 341 386 IPR011032 -
Cca03g01255 389 PANTHER ALCOHOL DEHYDROGENASE 8 387 - -
Cca03g01255 389 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 175 350 IPR036291 -
Cca03g01255 389 SUPERFAMILY GroES-like 11 196 IPR011032 -
Cca03g01255 389 Pfam Alcohol dehydrogenase GroES-like domain 43 171 IPR013154 -
Cca03g01255 389 Gene3D - 190 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01255 Cca-Chr3 29913293 29916816 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01255 43 375 Monolignol Biosynthesis Gene Families AT2G21730 27.003 1.29e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01255 K00121 - qsu:112023922 566.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01255 03 29913293 29916816 Cca03g01255 03 29913293 29916816 ECH