Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01254 ATGAAGGCCGTGCCCCTACCCTTTCAGGAATTTAGAGGGAACGGGGTGTTAGATTTTGCTTCTGGTGCTGTTGCTGTTTCAGATTCGTTGTTACTCCCACAGCAAGAGCAATTTCTGCAAAGGTGGAATCCCCACAGGGAAAACTGTTGCTATGTGGGCATTGAGCCCTCTTCTGGTTTGGACCCCAAAAGGAAAACAAGCCCTCCCACATCCTCCTCTACACTGTCTTCCTCACGCGGCGGAGGAGGAGGCTGCGGCTCCACCGATAGCACCAAGGTCTCGTCTGAGAAGGAGAACAATCCACCTCAAGTAGGGTTAGGAAGATGTGGGTTGGGAATGGAGGATTGGGAGAGTGTGTTGTCTGAGTCACCAGGTCAAGATCATTCCATTCTGAAATTCATTATGGCGGACATTGAGGACCCATCTATGGCATTGACCAAGCTATTGCAAGGTGGAACTGCATCTCATGATGTTGAATTCAATGGTTTTGGTTTGGTGGATCAAAGTTCTGTGCTTGACCCCATTCCTAGTGTCAACCTTGTGAGCAGCATTGACCCTTCTGGTCCCGGGAATTGTTCTGATTTCCCTTTCAATTCCCACAATAATGTTGGCTCAAATATTCCCAGAGTTGGTTCTGGTGTGAATCCAAGCCCCGGGTTTACTGCTTCAGCTAGCAATCTCTCACCAGTTTCACTCCCTCCGGGTGTGTTTcagccacagcagcagcagcagcaacagcCAATGGAGCCTATGGATGAGAAGCTACAAGTTCTCAGTTCCCAGTTCATTTTGAACCAAAATCCATCTCAGTTTATGCCAAACCCAGGTTTGGTTTTGCCTTTGACATATAGTCAGCTGCAAGAACATCATCAGCTTCTCCCTCAGCCTCCGGCGAAACGCCTCAATTGTGGCCCAAATTATCAGGTTCCAAAGACACCCTTTTTAGACTCTGGCCAAGAGCTGTTACTTCGGAGGCAGCAACAACAGCTTCAACTGCTTCCTCACCATATGCTGCAGAGGCCATCCATGGTGATGGCACCGAAGCAGAAAATGGTGAACCCCAGCGGCGAAGACTTGGCAAACCACCAGCTTCAACAGGCTATAATTGAACAGCTTTTCAAAGCTGCAGAGCTGATCGATGCCGGTAATCTGGAACTCGCGCACGGGATATTGGCGCGGCTCAATCACCAACTTTCTCCCATTGGGAAGCCTTTTCAAAGGGCTGCTTTCTATTTCAAGGAGGCCTTGCAATTACTTCTCCATTCAAATGCCAACAACAGTTCTTTGACCTTCTCACCCACGGGTCTTTTGCTCAAGATTGGTGCTTACAAATCATTCTCAGAAGTCTCACCAGTTCTGCAGTTTGCCAATTTCACCTGTAACCAAGCACTGCTTGAAGCCGTGGAAGGGTTTGATCGCATACACATAATAGATTTTGATATTGGGTTTGGTGGACAGTGGTCTTCTTTCATGCAAGAGTTAGCACTCAGGAATGGTGGTGCACCTAAACTCAAGATCACTGCATTTGTGTCACCTTCCCACCATGATGAAATTGAGCTCAGTTTCACCCAGGAGAATCTGAAACAATATGCTGGGGAGATTGACATGTCCTTTGAGCTTGAAATTCTGAGCCTGGAGTCTTTAAATTCTGCTTCCTGGCCCCAGCCACTTCGTGACTGCGAAGCTGTTGTGGTTAACATGCCTATTGGCTCTTTCTCAAATTACCCATCATATATTCCTTTGGTCCTTCGCTTTGTGAAGCAGCTCATGCCAAAAATTGTGGTTACATTGGATAGAAGTTGTGATCGAACTGATGCACCATTTCCTCAGCATCTGATTTTTGCACTTCAGTCTTATTCAGGGCTTCTCGAGTCACTTGATGCAGTTAATGTTCACCCAGATGTCCTTCAGATGATTGAGAAGTATTATCTTCAACCAGCAATGGAGAAGCTTGTTTTGGGTTGTCATGGTTCACAGGAAAGAACACTTCCTTGGAAAAATCTTCTCTTGTCATCTGGGTTCTCACCATTGACATTTAGTAACTTCACAGAATCCCAGGCCGAGTGTTTGGTGCAAAGGACACCTGGTAAGGGTTTCCATATTGAGAAGAGGCAGTCTTCCCTTGTTCTTTGCTGGCAAAGGAAGGATCTTGTCTCAGTTTCAACTTGGAGATGCTGA 2178 0.4605 MKAVPLPFQEFRGNGVLDFASGAVAVSDSLLLPQQEQFLQRWNPHRENCCYVGIEPSSGLDPKRKTSPPTSSSTLSSSRGGGGGCGSTDSTKVSSEKENNPPQVGLGRCGLGMEDWESVLSESPGQDHSILKFIMADIEDPSMALTKLLQGGTASHDVEFNGFGLVDQSSVLDPIPSVNLVSSIDPSGPGNCSDFPFNSHNNVGSNIPRVGSGVNPSPGFTASASNLSPVSLPPGVFQPQQQQQQQPMEPMDEKLQVLSSQFILNQNPSQFMPNPGLVLPLTYSQLQEHHQLLPQPPAKRLNCGPNYQVPKTPFLDSGQELLLRRQQQQLQLLPHHMLQRPSMVMAPKQKMVNPSGEDLANHQLQQAIIEQLFKAAELIDAGNLELAHGILARLNHQLSPIGKPFQRAAFYFKEALQLLLHSNANNSSLTFSPTGLLLKIGAYKSFSEVSPVLQFANFTCNQALLEAVEGFDRIHIIDFDIGFGGQWSSFMQELALRNGGAPKLKITAFVSPSHHDEIELSFTQENLKQYAGEIDMSFELEILSLESLNSASWPQPLRDCEAVVVNMPIGSFSNYPSYIPLVLRFVKQLMPKIVVTLDRSCDRTDAPFPQHLIFALQSYSGLLESLDAVNVHPDVLQMIEKYYLQPAMEKLVLGCHGSQERTLPWKNLLLSSGFSPLTFSNFTESQAECLVQRTPGKGFHIEKRQSSLVLCWQRKDLVSVSTWRC 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01254 725 PANTHER SCARECROW-LIKE PROTEIN 6 25 724 - -
Cca03g01254 725 MobiDBLite consensus disorder prediction 53 108 - -
Cca03g01254 725 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 25 724 IPR005202 -
Cca03g01254 725 Pfam GRAS domain family 369 724 IPR005202 -
Cca03g01254 725 ProSiteProfiles GRAS family profile. 359 724 IPR005202 -
Cca03g01254 725 MobiDBLite consensus disorder prediction 63 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01254 Cca-Chr3 29876401 29879046 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01254 367 725 GRAS Transcription Factor Family AT4G00150 59.669 4.22e-141 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca03g01254 GRAS 3.9e-92 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01254 - - gmx:100805945 1187.94