Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01252 ATGGCGGCCGCTCCCACGCCTCGTGAAGAGAACGTCTACATGGCGAAGCTTGCCGAGCAAGCCGAGCGCTACGAGGAAATGGTCGAGTACATGGAGAAGGTCTCCGCCGCCGCCGACAACGAGGAACTCACCGTCGAGGAGAGGAACCTCCTCTCCGTCGCCTACAAGAACGTCATCGGCGCGCGCCGTGCCTCCTGGCGCATCATCTCCTCCATCGAACAGAAGGAGGAGAGCCGCGGCAACGAGGACCACGTCGCCGTCATCCGCGACTACCGATCCAAGATCGAGTCCGAGCTCTCCAACATCTGCGACGGTATTCTCAAACTCCTCGACTCTCGCCTCATTCCCTCCGCTTCCTCCGGCGATTCCAAGGTCTTCTATCTCAAGATGAAGGGAGATTACCACAGGTACCTCGCCGAGTTCAAGACCGGCGCCGAGCGTAAGGAGGCTGCCGAGAGCACCCTCTCTGCCTACAAATCCGCTCAGGACATTGCAAATGCCGAACTGGCTCCAACTCATCCAATTAGGCTCGGCCTTGCTCTGAACTTCTCTGTATTCTACTATGAAATCCTTAACTCTCCTGATCGTGCCTGCAACCTTGCAAAACAGGCTTTTGATGAAGCAATTGCTGAATTGGATACGCTGGGAGAGGAGTCATACAAGGATAGCACTTTGATCATGCAACTTCTTCGTGATAACCTCACCCTTTGGACATCTGACATGCAGGATGATGGGGCAGATGAAATTAAAGAAGCAGCACCAAAACCAGACGATCAGCAGTAA 783 0.5466 MAAAPTPREENVYMAKLAEQAERYEEMVEYMEKVSAAADNEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVAVIRDYRSKIESELSNICDGILKLLDSRLIPSASSGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLSAYKSAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDGADEIKEAAPKPDDQQ 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01252 260 SUPERFAMILY 14-3-3 protein 8 240 IPR036815 -
Cca03g01252 260 SMART 1433_4 8 251 IPR023410 -
Cca03g01252 260 Gene3D - 2 251 IPR036815 -
Cca03g01252 260 PIRSF 14-3-3 2 250 IPR000308 -
Cca03g01252 260 ProSitePatterns 14-3-3 proteins signature 2. 220 239 IPR023409 -
Cca03g01252 260 ProSitePatterns 14-3-3 proteins signature 1. 48 58 IPR023409 -
Cca03g01252 260 PRINTS 14-3-3 protein zeta signature 42 71 IPR000308 -
Cca03g01252 260 PRINTS 14-3-3 protein zeta signature 91 115 IPR000308 -
Cca03g01252 260 PRINTS 14-3-3 protein zeta signature 122 144 IPR000308 -
Cca03g01252 260 PRINTS 14-3-3 protein zeta signature 157 183 IPR000308 -
Cca03g01252 260 PRINTS 14-3-3 protein zeta signature 184 210 IPR000308 -
Cca03g01252 260 PRINTS 14-3-3 protein zeta signature 211 240 IPR000308 -
Cca03g01252 260 PANTHER 14-3-3 PROTEIN 6 6 259 - -
Cca03g01252 260 Coils Coil 14 34 - -
Cca03g01252 260 Pfam 14-3-3 protein 14 238 IPR023410 -
Cca03g01252 260 PANTHER 14-3-3 PROTEIN 6 259 IPR000308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01252 Cca-Chr3 29788735 29791560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01252 6 260 14-3-3 family AT1G78300 90.625 1.11e-172 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01252 K06630 - gmx:100792014 499.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01252 03 29788735 29791560 Cca03g01252 03 29788735 29791560 ECH