Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01251 ATGGAGTCTCAGAGTCAGAGAGATCGCAGAACAGATGCTCTCGGAGATCTTCGACTCCTTCCCGACGAAATCCTCTGCACTATTTTGGAACGTCTCACTCCCCGAGATGCTGCTCGGGTCGCTTGCGTTAGCAGTGTGATGTACATACTGTGCAATGAAGAACCACTGTGGATAACTCTATGCCTAAAAGGAGCATCTGGTTTGCTTCAATACAAAGGCTCTTGGAAGAAAACTGCCCTACATAATGAGAATCTGCCAGACAAATACAAAGAGTACCATCGAGGGCCTTTATATTTTGATGGGTTCAACTCTTTATTTCTGTACAGGAGATTATACCGCTGTCATACCACATTGGAGGCATTTTACGCAGATAACGGAAATGTGGAAAGAATAAAAGACATCTCTCTGAGTCTGAAGGACTTCTATAATGAATATGATGCAAAGAAACCGGTTATGCTTACTGGATTGGCTGATACATGGCCCGCCCGGCATAAATGGACAACTGATCAGCTGTTGCAAGACTATGGAGATGTAGCATTTAAAATTTCTCAAAGGAGTTTTGGGAAGATCTCCATGAAATTCAAGGATTATGTCTCATACATGAAAGTTCAGCACGATGAAGATCCCTTGTATATTTTTGACGAAAAGTTTGGTGAAGCTGCACCTAACTTATTGAAGGATTATTCTGTGCCTTATCTTTTTCAAGAAGACCTCTTTGATATCTTAGATACAGATAAACGACCATCCTATAGGTGGCTCATAATTGGACCAGAGAGATCTGGGGCCTCTTGGCATGTTGATCCAGCTCTAACCAGTGCATGGAATACCCTTCTTTGTGGCCGTAAAAGGTGGGCATTATATCCTCCAGGAAAAGTGCCTTTGGGTGTGACAGTACATGTCAATGATGAAGATGGCGATGTCAATATTGAGACTCCATCTTCACTGCAGTGGTGGCTAGACTTCTATCCTCTTCTTGCGGATGAAGACAAGCCAATTGAGTGTACACAACTACCTGGAGAAACAATTTATGTTCCAAGTGGATGGTGGCACTGTGTGCTAAATTTGGAAACAACTATTGCTGTCACACAGAATTTTGTGAATTCCAACAACTTTGAATTTGTATGTTTGGATATGGCACCTGGTTATCGTCATAAAGGAGTTTGTCGTGTTGGGTTGCTTGCTCTTGATGAAGATAGTTATGAAAATGTCAGACAGAACATGTCATGTAAAGAAAAGGATTCAAGTTACTCTTATTTGTCAAGGAAAGAGAAAAGAGCTAAAACTCAGAAAGATGTAGATGATCTGTATTGTGAAAGAGCCATAAATGGTGCATCTAGAAGCTACAATTTATGGAAAGATGGATTTTCTTATGATATAAACTTCTTATCCATGTTTTTGGATAAAGACAGAGACCACTACAGTTCCTTGTGGAGCTCAGGCAACAGCATTGGTCAGCGAGAACTAAGAGAATGGTTATCTAAGCTCTGGATTCAAAAACCAAAAATGAGAGAAATAATATGGAAGGGAGCATGTATTGCTCTAAATGCTGACAAGTGGTTAGAATGCCTATCAAAAATTTGTGCCTTCCATAATTTGCCCCCTCCCACTGATGATGAAAGGCTTCCAGTTGGCACGGGTAGCAATCCTAAGGTGCCTTCAAGATGCAAGGTCCAGCATCTTACCTCAGCAATAGGTGAAGAGATTGTCACTTCGACTGCACCAAGAAAACCAAAAATAACAAGATCCAATGGCATTGTTTATTTAGTGGGAAACTCTGTCGTCAAGATTTTTGTTGAAGGAGGACTGGAAGCTTCACTTTATGGTTTAGGCACAGAGCTAGAGTTTCATAGTCTGTTGCATGAAGCCAACTCCCCTCTCAGTAAACATATTCCCAATGTTTTGGCCAGTGGGATTATTTATCTTGAAAATGGATCTTATAACCATTTAAGTTGGGATGGAAAAGGAGTCCCTGATGTCATTGTGAAGAACAATCTAATCAGTAAGATATGCAACGTCAATGGTTTCTCATTTGGGGTATGGGGCAAGAAACAGTTGGAGTATAGAAATGCTGGGATGCTGGTGGATGGATCAGTTAGCTTAGATGGTCACTCAAGCATATGGCCATATATGATAACAAAGCGATGTGAAGGGAATATGTTTGCGGAATTAAGAGACAGACTAACATGGGAAGATACAACAAAATTGGCCTCCTTCTTGGGGGAACAGCTGTGCCACCTTCATCTTTTGCCATATCCACCCCTAAATATTTCATCTTTTTCTGATATTGAAAATGACCTAAGCGTGGTTGAGGCTAATGGTTGCATTGCAACTATTAACTGTAAATCAAACGCTGCAGCAGAATGGGGGCTCTTCACCAGAACCTTAACAAAGATGAGGAAGGATGTGTCAAGCCGTTTGACCAAGTGGGGAGATCCAATTCCTAGCAAACTGATAGAGAAGATTGATGAATATATCCCACCTGATTTTGCTGAGTTGTTAAATATAACCGAGAATTTTGGAAATCATGCTAGTAAACCTTGCTCCTGGATACACACTGACATTATGGATGATAACATTTACATGAAACCATCATTGGTTTGCTCTACTACCAGTGGGAAAACTGAAGATAGCACCATGGTGGACAATGGTTCGTTGAGTAATTATGAAGTAAAATCATGGTATCCTAGTCATATTCTTGATTTCAGTGATCTTTCGATAGGTGATCCTCTTTTTGACTTGATACCAATTTATTTAGATGTATTGAGAGGTGATTCGTATCTCCTTAAGCAGTTTTTAGAAAGTTACAAACTTCCTTTTGCTAGTAACATATCAAGGTATGAGTCAACAGAGAGTGATCAAAAGTTTGGTCGACTTTCTTATGTTGCCATGTGCTATTGCATCTTGCATGATGAAAATGTCTTGGGAGCTATTTTTAGCATATGGGAAGAACTAAGATCAGCAAATTCATGGGAAGAAGTTGAACTGACAGTTTGGGGAGAGTTGAACAATTACAAAGGCTTTCCGTGA 3027 0.403 MESQSQRDRRTDALGDLRLLPDEILCTILERLTPRDAARVACVSSVMYILCNEEPLWITLCLKGASGLLQYKGSWKKTALHNENLPDKYKEYHRGPLYFDGFNSLFLYRRLYRCHTTLEAFYADNGNVERIKDISLSLKDFYNEYDAKKPVMLTGLADTWPARHKWTTDQLLQDYGDVAFKISQRSFGKISMKFKDYVSYMKVQHDEDPLYIFDEKFGEAAPNLLKDYSVPYLFQEDLFDILDTDKRPSYRWLIIGPERSGASWHVDPALTSAWNTLLCGRKRWALYPPGKVPLGVTVHVNDEDGDVNIETPSSLQWWLDFYPLLADEDKPIECTQLPGETIYVPSGWWHCVLNLETTIAVTQNFVNSNNFEFVCLDMAPGYRHKGVCRVGLLALDEDSYENVRQNMSCKEKDSSYSYLSRKEKRAKTQKDVDDLYCERAINGASRSYNLWKDGFSYDINFLSMFLDKDRDHYSSLWSSGNSIGQRELREWLSKLWIQKPKMREIIWKGACIALNADKWLECLSKICAFHNLPPPTDDERLPVGTGSNPKVPSRCKVQHLTSAIGEEIVTSTAPRKPKITRSNGIVYLVGNSVVKIFVEGGLEASLYGLGTELEFHSLLHEANSPLSKHIPNVLASGIIYLENGSYNHLSWDGKGVPDVIVKNNLISKICNVNGFSFGVWGKKQLEYRNAGMLVDGSVSLDGHSSIWPYMITKRCEGNMFAELRDRLTWEDTTKLASFLGEQLCHLHLLPYPPLNISSFSDIENDLSVVEANGCIATINCKSNAAAEWGLFTRTLTKMRKDVSSRLTKWGDPIPSKLIEKIDEYIPPDFAELLNITENFGNHASKPCSWIHTDIMDDNIYMKPSLVCSTTSGKTEDSTMVDNGSLSNYEVKSWYPSHILDFSDLSIGDPLFDLIPIYLDVLRGDSYLLKQFLESYKLPFASNISRYESTESDQKFGRLSYVAMCYCILHDENVLGAIFSIWEELRSANSWEEVELTVWGELNNYKGFP 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01251 1008 Pfam Cupin-like domain 147 369 IPR041667 -
Cca03g01251 1008 ProSiteProfiles F-box domain profile. 14 60 IPR001810 GO:0005515
Cca03g01251 1008 Gene3D - 2 91 - -
Cca03g01251 1008 SUPERFAMILY F-box domain 6 67 IPR036047 GO:0005515
Cca03g01251 1008 SMART cupin_9 219 377 IPR003347 -
Cca03g01251 1008 Pfam F-box-like 19 63 IPR001810 GO:0005515
Cca03g01251 1008 PANTHER JMJC DOMAIN-CONTAINING PROTEIN 8 580 939 - -
Cca03g01251 1008 Gene3D Cupin 111 367 - -
Cca03g01251 1008 SUPERFAMILY Protein kinase-like (PK-like) 707 940 IPR011009 -
Cca03g01251 1008 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 2 549 - -
Cca03g01251 1008 PANTHER JMJC DOMAIN-CONTAINING PROTEIN 8 2 549 - -
Cca03g01251 1008 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 580 939 - -
Cca03g01251 1008 SMART fbox_2 20 60 IPR001810 GO:0005515
Cca03g01251 1008 ProSiteProfiles JmjC domain profile. 219 382 IPR003347 -
Cca03g01251 1008 SUPERFAMILY Clavaminate synthase-like 125 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01251 Cca-Chr3 29774910 29786149 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01251 1 1004 Glycosyltransferase AT1G78280 58.974 0.0 1189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Cca03g01251 Cupin_8 1.7e-22 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01251 - - gmx:100792541 1809.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01251 03 29774910 29786149 Cca03g01251 03 29774910 29786149 ECH