Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01244 ATGAGTGAAACGGTAGTGACTCTCCATCCGCAAACAAGGACACCCATTTCTTCTTTGGATGCCATGGCTCATCATCACCACCCACATTATCGGTCACAGTTCGGAGACACAACGTTCACCAAATTGTTCGTGGGAGGACTAGCCTGGGAGACTCCCACCGAAGAAATGCGCAAATATTTCGAGCAGTTCGGAGACATTCTTGAAGCTGTCATAATCACTGACAAGAGCACCGGAAAATCCAAAGGCTACGGATTCGTAACATTCTGCGATCAGGAATCAGCAAGAAGGGCATGTGCTGATCCAAACCCAGTAATAGATGGAAGAACAGCAAATTGTAACATTGCTTCTCTGGGAAGGACTCGACCTTCACCACCCCGAGGGAGGAATATAGTTCAAGGTGGAGGAGGATCAGCACCGGCAGCGGGAGCACCGTCGCTGccaccaccaccaccaccaccaccaccTGTTCTGTACCCACCATATGGGCAACGAACTAACCAGAACGAGGATGGAATGGAAGAGTCGTATGTCGACCGATCTCAACAGCCTAATCCGTCGTCGGCCATCGAGCAACTAAAGGCCGAAATGATGGAACTCAGAAGGCTTCGAGAAAAGGATGCTCACGAATTATCGGCCTTGAGAAGAGAAAATGCCGAGCTCAGGAGCGATAATCGGACATGGCACCCGTCGCATGATACTCGTAAGCAGTCGACCCGGGACCAAGGTGAATCATCTGGATGGTACAAGGAAGTCAATGTCCCTCGGCCATCAGGCGGACcaacgacaacgacacaagaccagcaacgacgacAGGGAAGGACGccattcacaccagatatcgccggggctcgtctgcccgacaactggaaaaacttgaccctggaaaagtatgacggaacctccgaccctgaagaacacctcgacgtgttcgtcacgcagaaggtggaggctcgtcttcagcacggaaaagacacttaa 978 0.3967 MSETVVTLHPQTRTPISSLDAMAHHHHPHYRSQFGDTTFTKLFVGGLAWETPTEEMRKYFEQFGDILEAVIITDKSTGKSKGYGFVTFCDQESARRACADPNPVIDGRTANCNIASLGRTRPSPPRGRNIVQGGGGSAPAAGAPSLPPPPPPPPPVLYPPYGQRTNQNEDGMEESYVDRSQQPNPSSAIEQLKAEMMELRRLREKDAHELSALRRENAELRSDNRTWHPSHDTRKQSTRDQGESSGWYKEVNVPRPSGGPTTTTQDQQRRQGRTPFTPDIAGARLPDNWKNLTLEKYDGTSDPEEHLDVFVTQKVEARLQHGKDT 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01244 325 PANTHER - 26 183 - -
Cca03g01244 325 MobiDBLite consensus disorder prediction 256 274 - -
Cca03g01244 325 MobiDBLite consensus disorder prediction 210 239 - -
Cca03g01244 325 SUPERFAMILY RNA-binding domain, RBD 25 136 IPR035979 GO:0003676
Cca03g01244 325 MobiDBLite consensus disorder prediction 115 185 - -
Cca03g01244 325 CDD RRM_RBM24_RBM38_like 40 115 - -
Cca03g01244 325 Coils Coil 189 223 - -
Cca03g01244 325 MobiDBLite consensus disorder prediction 142 160 - -
Cca03g01244 325 PANTHER GEO13361P1-RELATED 26 183 - -
Cca03g01244 325 MobiDBLite consensus disorder prediction 210 287 - -
Cca03g01244 325 Gene3D - 10 136 IPR012677 -
Cca03g01244 325 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 117 IPR000504 GO:0003723
Cca03g01244 325 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 99 IPR000504 GO:0003723
Cca03g01244 325 SMART rrm1_1 41 113 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01244 Cca-Chr3 29686077 29689449 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01244 42 116 C2H2 Transcription Factor Family AT2G19380 41.333 3.73e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01244 K25006 - ccaj:109816981 290.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01065 05 27455131 27460171 Cca03g01244 03 29686077 29689449 PCT