Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01243 ATGAGTGAAACGGTAGTGACTCTCCATCCGCAAACAAGGACACCCATTTCTTCTTTGGATGCCATGGCTCATCATCACCACCCACATTATCGGTCACAGTTCGGAGACACAACGTTCACCAAATTGTTCGTGGGAGGACTAGCCTGGGAGACTCCCACCGAAGAAATGCGCAAATATTTCGAGCAGTTCGGAGACATTCTTGAAGCTGTCATAATCACTGACAAGAGCACCGGAAAATCCAAAGGCTACGGATTCGTAACATTCTGCGATCAGGAATCAGCAAGAAGGGCATGTGCTGATCCAAACCCAGTAATAGATGGAAGAACAGCAAATTGTAACATTGCTTCTCTGGGAAGGACTCGACCTTCACCACCCCGAGGGAGGAATATAGTTCAAGGTGGAGGAGGATCAGCACCGGCAGCGGGAGCACCGTCGCTGccaccaccaccaccaccaccaccaccTGTTCTGTACCCACCATATGGCTATACAACCTACACTCCTGCTGATTACGGGTACCAAGCCACATTGTACAACCCACAGATTCAACAACCGCAATACTATCAACAACTTTATGGAGCATCATCTTCAACCATGAGCACCCCATATTACTATGGTTATTCATTGCAAGCACCAAGAAACACATTTTCTTCACCCCAAGCAAATCGCTCCTATCTATACTACCCAACGCCCATGGAAGTCTCATTCTCTGGATATCGTCCACCCCAACAATCACCAATGAGGCAACCCTTTCCTTCCCTTAATGGTAGCTTTAATTCTCTTCTCTTCTTTAATTAA 798 0.4511 MSETVVTLHPQTRTPISSLDAMAHHHHPHYRSQFGDTTFTKLFVGGLAWETPTEEMRKYFEQFGDILEAVIITDKSTGKSKGYGFVTFCDQESARRACADPNPVIDGRTANCNIASLGRTRPSPPRGRNIVQGGGGSAPAAGAPSLPPPPPPPPPVLYPPYGYTTYTPADYGYQATLYNPQIQQPQYYQQLYGASSSTMSTPYYYGYSLQAPRNTFSSPQANRSYLYYPTPMEVSFSGYRPPQQSPMRQPFPSLNGSFNSLLFFN 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01243 265 MobiDBLite consensus disorder prediction 116 154 - -
Cca03g01243 265 Gene3D - 10 136 IPR012677 -
Cca03g01243 265 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 99 IPR000504 GO:0003723
Cca03g01243 265 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 117 IPR000504 GO:0003723
Cca03g01243 265 PANTHER - 26 253 - -
Cca03g01243 265 SUPERFAMILY RNA-binding domain, RBD 25 136 IPR035979 GO:0003676
Cca03g01243 265 CDD RRM_RBM24_RBM38_like 40 115 - -
Cca03g01243 265 SMART rrm1_1 41 113 IPR000504 GO:0003723
Cca03g01243 265 PANTHER GEO13361P1-RELATED 26 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01243 Cca-Chr3 29636250 29639701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01243 36 116 C2H2 Transcription Factor Family AT2G19380 39.506 1.10e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01243 K25006 - gmx:100811977 392.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01243 03 29636250 29639701 Cca03g01243 03 29636250 29639701 ECH