Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01221 ATGAGGAACCAAAATGTGGTGAGTCATGAGGTTATTAACACGTTGATTGCTGTGGCAGCGTCCATTTCAAACTCACCCGTCTTACCAAGTGGAACAGTGCCAGAATCGCTGGCTGTGCTTGGTGGCTTTTGGGGCATGCCCCGTAAAAATCTTGTCAAAAGGTTGGAAGGTGCTAAAGTTAGCGCTTGGATTGATTCAATGAGAGCTTCTTCCCCTACTCGTGTTAAATCAGAAACCCAAGAAAAAAAATCTTGGATTCTTTATCATCCTTCAGCTCTCAACACCTTTGAACAAATATTGCATAGCTCCAAAGGAAAGCAGATTGTAGTTTTTCTTGACTACGATGGAACTCTCTCCCCTATTGTTGCAGATCCAGATAAAGCTTTCATGACTAGAAAGATGAGAGCGACGCTTAAGGGCATAGCAAGACATTTCCCCACAGCAATCGTGACCGGAAGGTGCAGGGACAAGGTATATGACTTTGTAAAATTGGCAGAACTGTACTACGCTGGAAGCCATGGCATGGACATCAAAGGGCCAACAAAAATCCAAAGTCCAAAGCAAGATAATAATAAAACAGTTTCGTTCCAACCAGCGAGTCAATTCCTGCCCATGATCGATGAGGTGTACAAGATCTTGTTGGAAAAAACAAAGTGTGTCCCAGGGTCTAAGGTTGAGAACAACAAGTTTTGCTTATCCGTGCACTTCCGTTGTGTTGACGAAAAGAGTTGGGCAGCGTTGGCGGAGAAAGTTAGATTGGTGCTGAATGAGTACCCACAACTTAAGCTAACCCAAGGAAGAAAAGTGCTAGAGATTCGTCCAACCATCAAATGGGACAAGGGCAAGGCTCTTGAATTTTTGTTAGAATCCTTAGGATACGATAATTCGAATGATGTGTTTCCAATCTATATTGGTGATGATCGAACTGATGAGGATGCTTTTAAGGTTTTGCGCAGTAGGGGTCAAGGAATTGGGATTCTTGTTTCTAGAGTTCCAAAAGAAACCGATGCGTCCTATACCTTGCAAGATCCATCAGAGGTTGAGCAATTCTTGCGGCGTTTGGTGGAGTGGAAAAGATCGAGTACTGTGAGTGTGACTCCCACAAGTGAATAG 1113 0.4358 MRNQNVVSHEVINTLIAVAASISNSPVLPSGTVPESLAVLGGFWGMPRKNLVKRLEGAKVSAWIDSMRASSPTRVKSETQEKKSWILYHPSALNTFEQILHSSKGKQIVVFLDYDGTLSPIVADPDKAFMTRKMRATLKGIARHFPTAIVTGRCRDKVYDFVKLAELYYAGSHGMDIKGPTKIQSPKQDNNKTVSFQPASQFLPMIDEVYKILLEKTKCVPGSKVENNKFCLSVHFRCVDEKSWAALAEKVRLVLNEYPQLKLTQGRKVLEIRPTIKWDKGKALEFLLESLGYDNSNDVFPIYIGDDRTDEDAFKVLRSRGQGIGILVSRVPKETDASYTLQDPSEVEQFLRRLVEWKRSSTVSVTPTSE 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01221 370 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 362 - -
Cca03g01221 370 Pfam Trehalose-phosphatase 111 345 IPR003337 GO:0003824|GO:0005992
Cca03g01221 370 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 110 319 IPR006379 -
Cca03g01221 370 SUPERFAMILY HAD-like 109 357 IPR036412 -
Cca03g01221 370 TIGRFAM T6PP: trehalose-phosphatase 106 355 IPR003337 GO:0003824|GO:0005992
Cca03g01221 370 CDD HAD_TPP 109 347 - -
Cca03g01221 370 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 362 IPR044651 GO:0004805|GO:0005992
Cca03g01221 370 Gene3D - 223 366 IPR023214 -
Cca03g01221 370 Gene3D - 108 216 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01221 Cca-Chr3 29001016 29003804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01221 104 354 Trehalose Biosynthesis Gene Families AT1G70290 26.296 2.58e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01221 K01087 - gmx:100788641 667.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01221 03 29001016 29003804 Cca03g01221 03 29001016 29003804 ECH
Cca05g01049 05 27183868 27186584 Cca03g01221 03 29001016 29003804 PCT