Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01219 ATGGCAGCTATGATGGATTTTTACAGCAGCATAGAGTTTGAAAAAGCTCACTCAGATCCCTTCAGGGGTGAACTAATGGAAGTTCTTGAACCTTTTATGAAGAGtccttcttcttcttcaccttgttctcctcttccgtctttcccttcaacttcttccaactactttccctcctctccctTTGTTTTCCCCAAGATGACCCATCATGTATTTGCTGACGGGTTATCCTTATCCTTCCCCAACACCCAAAACTTAATAGGGCTGGGCCAACCCACATCTCTTCTGGGCCTGAACCACCTAACCCCCTCTCAGATctctcagatccaggcccaaatccagctccagagccagcagcagcAGCAGAACAACCACAACCACAACACCCTGAGCTTCCTCGGGCCGAAGCCCATCCCCATGAAGCACGTGGGCATGCCTCCGAAGCCCGCGAAGCTCTACAGAGGGGTTCGGCAGAGGCACTGGGGAAAGTGGGTGGCGGAGATCAGACTCCCGAAGAACCGTACGAGGCTGTGGCTGGGAACCTTCGACACCGCCGAGGAAGCTGCTCTGGCGTACGACAAGGCCGCCTACAGACTCCGAGGTGACTTCGCTCGGCTAAACTTCCCCAACCTCCGACACCAGGGGTCCTCGGTGGGCGGAGACTTCGGGGAGTACAAGCCTCTTCATTCCTCTGTTGACGCCAAGCTCCAGGCCATTTGTGAAGGCCTCGCTGAGCTGCAGAAGCAGGGGAAGTCTGAGAAGCCTTCGCCTTCCTCCAAGAGGTCGCGATCCAAAGCCGCTCCTCCGCCGGAGAAGCCTCACTCCGACAACAGCAGCTGTTGCAAGGTTGAGGTTTCCTCGAGCGAGGGGTCCGAAGGTTCTTCGCCTCTCTCGGATCTCACTTTTGCTGACGTCAGCGAACCGCTGTGGGAAGGGGATTCGGATAATTTTAATCTCCACAAGTACCCCTCTTATGAGATCGATTGGGATTCTCTCTGA 996 0.4849 MAAMMDFYSSIEFEKAHSDPFRGELMEVLEPFMKSPSSSSPCSPLPSFPSTSSNYFPSSPFVFPKMTHHVFADGLSLSFPNTQNLIGLGQPTSLLGLNHLTPSQISQIQAQIQLQSQQQQQNNHNHNTLSFLGPKPIPMKHVGMPPKPAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYRLRGDFARLNFPNLRHQGSSVGGDFGEYKPLHSSVDAKLQAICEGLAELQKQGKSEKPSPSSKRSRSKAAPPPEKPHSDNSSCCKVEVSSSEGSEGSSPLSDLTFADVSEPLWEGDSDNFNLHKYPSYEIDWDSL 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01219 331 MobiDBLite consensus disorder prediction 253 269 - -
Cca03g01219 331 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 4 330 - -
Cca03g01219 331 ProSiteProfiles AP2/ERF domain profile. 151 208 IPR001471 GO:0003700|GO:0006355
Cca03g01219 331 Pfam AP2 domain 152 200 IPR001471 GO:0003700|GO:0006355
Cca03g01219 331 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 4 330 - -
Cca03g01219 331 SUPERFAMILY DNA-binding domain 151 209 IPR016177 GO:0003677
Cca03g01219 331 SMART rav1_2 151 214 IPR001471 GO:0003700|GO:0006355
Cca03g01219 331 MobiDBLite consensus disorder prediction 246 299 - -
Cca03g01219 331 Gene3D AP2/ERF domain 151 209 IPR036955 GO:0003700|GO:0006355
Cca03g01219 331 PRINTS Ethylene responsive element binding protein signature 152 163 IPR001471 GO:0003700|GO:0006355
Cca03g01219 331 PRINTS Ethylene responsive element binding protein signature 174 190 IPR001471 GO:0003700|GO:0006355
Cca03g01219 331 MobiDBLite consensus disorder prediction 278 299 - -
Cca03g01219 331 CDD AP2 150 210 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01219 Cca-Chr3 28971631 28973813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01219 1 331 AP2-EREBP Transcription Factor Family AT1G78080 52.408 4.29e-94 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca03g01219 AP2 1.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01219 K09286 - gmx:732559 408.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01219 03 28971631 28973813 Cca03g01219 03 28971631 28973813 ECH
Cca05g01045 05 27146766 27147710 Cca03g01219 03 28971631 28973813 PCT