Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01208 ATGTCTTCGATGGGTCCTCCTGCTGATGAAAATCTTGAAATAAAACAGGTTGATCTGAGAAGTATGTCATCTTCTTCACATGGTCAGGCACCACAAGCCCACAAAGTGGCAATTCCTCCAAGACAGAACCTCTTCAACGAATTCAAAGACACTATAAAAGAAACATTATTTGCTGATGATCCTCTAAGACCCTTCAAAGATCAAACTAAATCAAAGAAGCTCATCCTCGGTATTGAGGCCATATTCCCAATACTTAATTGGGGGAGAAGTTACAACCTTAAAAAATTTAAAGGGGATATAATATCTGGTCTCACTATTGCTAGTCTTTGCATTCCTCAGGATATTGGATACGCCAAGCTTGCAAATTTGCCTCCACAGTATGGACTGTACTCCAGTTTTGTTCCACCACTGATCTATGCTGTCATGGGTAGCTCTCGTGATATTGCTATTGGACCGGTGGCAGTGGTTTCTCTCTTGTTGGGGACCTTACTTAGTAATGAGATTGATCCTAAAACACATGCAGAAGAATATCGGCGACTAGCTTTTACAGCCACTTTTTTTGCTGGGATTACTCAAGCAACGCTTGGTATACTTAGGCTTGGATTCTTGATTGACTTCCTATCCCATGCTGCTATCGTGGGTTTTATGGGGGGTGCTGCTATCACAATTGCCCTTCAGCAGCTTAAGGGTTTCCTTGGCATTAAAACTACTCAGTTCACAAAGAACACTGATATTGTCTCTGTGCTGCATTCAGTATTCTCAACAGCCCATCACGGATGGAACTGGCAAACTATAGTAATCGGAGCTAGCTTTTTGGGTTTTCTTCTGTTCGCCAAATATATTGGAAAGAAAAACACCAGATTCTTCTGGGTGCCAGCAATTGCTCCATTGATATCCGTTATCTTGTCCACTTTTTTTGTATACATAACCCGTGCAGATAAGCAAGGAGTAGAAATTGTAAGAAAAATAGAAAGAGGAATCAATCCATCATCAGTTAAAGAACTTTATTTAAGCGGTGAATACCTTGGAAAAGCTTTTAAAATTGGCATCGTGGCAGGCATGATAGCATTGACTGAAGCCACAGCAATTGGAAGAACATTTGCATCTATGAAGGACTATCAACTGGATGGAAACAAAGAAATGGTAGCATTAGGAGCAATGAATGTTGTTGGTTCGATGACTTCGTGTTATGTAGCAACTGGTTCTTTCTCTCGGTCAGCAGTAAACTACATGGCTGGCTGCCAAACTGCAGTCTCCAATATAGTGATGTCAGCAGTTGTGTTCTTAACCCTGGAATTCATCACTCCTCTTTTTAAGTACACTCCAAATGCCATTCTTGCTGCCATCATCATTTCTGCTGTCATCAACCTTGTAGACTATGAAGCAGCAATTTTGATTTGGAAGATAGATAAAATTGATTTTATTGCTTGCATGGGTGCATTTCTTGGGGTTGTTTTTCACTCAGTTGAGATAGGACTTCTGATTGCTGTCTCCATATCCTTTGCAAAGATTCTACTACAAGTCACAAGGCCCCGAACTGCTATTCTGGGGAAGATTCCTAGGACAACTGTCTATAGAAACATCCAACAATATCCAGAAGCTAGTAAGGTTCCTGGTGTACTGATTGTAAGAGTCGATTCTGCAATATATTTCTCCAACTCCAATTATGTTAAAGAAAGGACATTAAGATGGCTGATGGATGAAGAAGAAAAAGTGAAAGGAGACTACCGCACAAAAATCCAGTTTCTGATAGTTGAAATGTCACCTGTTACTGACATCGACACAAGTGGCATCCAAGCCTTTGAAGAGTTACACAGAAGTCTTGAGAAGAAGGGTGTTGAGCTTGTTCTTGCAAATCCTGGTCCAGCAGTGACAGACAAGCTTTATGCATCCAAATTTGCGAACAGAATTGGCGAGGACAAGATCTTCCTAACTGTTGCAGAGGCCGTTGCATACTGTTCTCCAAAGGTGGTTGAGGACCCTTGA 1986 0.4114 MSSMGPPADENLEIKQVDLRSMSSSSHGQAPQAHKVAIPPRQNLFNEFKDTIKETLFADDPLRPFKDQTKSKKLILGIEAIFPILNWGRSYNLKKFKGDIISGLTIASLCIPQDIGYAKLANLPPQYGLYSSFVPPLIYAVMGSSRDIAIGPVAVVSLLLGTLLSNEIDPKTHAEEYRRLAFTATFFAGITQATLGILRLGFLIDFLSHAAIVGFMGGAAITIALQQLKGFLGIKTTQFTKNTDIVSVLHSVFSTAHHGWNWQTIVIGASFLGFLLFAKYIGKKNTRFFWVPAIAPLISVILSTFFVYITRADKQGVEIVRKIERGINPSSVKELYLSGEYLGKAFKIGIVAGMIALTEATAIGRTFASMKDYQLDGNKEMVALGAMNVVGSMTSCYVATGSFSRSAVNYMAGCQTAVSNIVMSAVVFLTLEFITPLFKYTPNAILAAIIISAVINLVDYEAAILIWKIDKIDFIACMGAFLGVVFHSVEIGLLIAVSISFAKILLQVTRPRTAILGKIPRTTVYRNIQQYPEASKVPGVLIVRVDSAIYFSNSNYVKERTLRWLMDEEEKVKGDYRTKIQFLIVEMSPVTDIDTSGIQAFEELHRSLEKKGVELVLANPGPAVTDKLYASKFANRIGEDKIFLTVAEAVAYCSPKVVEDP 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01208 661 SUPERFAMILY SpoIIaa-like 532 654 IPR036513 -
Cca03g01208 661 Pfam Sulfate permease family 96 478 IPR011547 GO:0016021
Cca03g01208 661 TIGRFAM sulP: sulfate permease 83 649 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cca03g01208 661 ProSiteProfiles STAS domain profile. 530 653 IPR002645 -
Cca03g01208 661 CDD STAS_SulP_like_sulfate_transporter 531 646 - -
Cca03g01208 661 Gene3D STAS domain 510 657 IPR036513 -
Cca03g01208 661 Pfam STAS domain 531 649 IPR002645 -
Cca03g01208 661 PANTHER HIGH AFFINITY SULFATE TRANSPORTER TYPE 1 13 661 - -
Cca03g01208 661 ProSitePatterns SLC26A transporters signature. 125 146 IPR018045 GO:0008271|GO:0008272
Cca03g01208 661 PANTHER SULFATE TRANSPORTER 13 661 IPR001902 GO:0015301|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01208 Cca-Chr3 28794224 28799585 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01208 1 660 Inorganic Solute Cotransporters AT1G22150 73.333 0.0 971
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01208 K17470 - gmx:100804208 1177.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01208 03 28794224 28799585 Cca03g01208 03 28794224 28799585 ECH
Cca05g01035 05 26953027 26957864 Cca03g01208 03 28794224 28799585 PCT