Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01207 ATGAGTTCATCTCCCAGTATGAACATGAGCCAGCAGGAGCTCTTCCATGTTGAGGAAACTAGCCAAGTAGAGAGGTCCCTCTGGGTGCTGAATCCTCCCAATCCACCACCTCTATGGAACAAGCTATTTGGTCCACTGAAGAAAACCGTGTCCTTTTTTTCATCCAAGAAGAAAACTTGCGTTGGACATTCTGTTTCATTTTTGGAGAGTTTATTTCCCATCCTTAGCTGGTTCAAAAACTACAAAGCCTCCAAGTTTAAAGATGATTTGCTAGCAGGTTTAACTCTTGCCAGCCTCAGCATACCTCAGAGTATAGGATATGCTAATTTGGCAAGACTTGATCCTCAATATGGCCTGTACACCAGTGTTGTTCCTCCTCTAATCTATGCTCTGATGGGGAGTTCAAGAGAAATTGCAATTGGACCTGTTGCTGTAGTGTCATTACTTCTATCTTCCCTTGTCCCCAAAGTGGTAGATCCTGCTGTTGATCCCGATGCCTACAGAAACGTTGTCTTTACCGTGACCTTATTTGCTGGAATCTTTCAAACTGCATTCAGTGTTTTCAGGTTGGGGTTTCTTGTGGATTTTCTTTCACATGCTGCACTTGTTGGATTCATGGCAGGAGCAGCCATCATTATAGGTCTTCAGCAGCTCAAGGGCTTGCTGGGGATTAGTCACTTTACCAACAAAACTGATGTAATATCTGTGTTGGAATCTGTTTATAAGTCACTCCATCAACAAATTACATCCGGAGAAAAATGGTACCCTCTGAATTTTGTCATCGGCTGTTCATTCCTAATTTTCCTTTTAACTTCCCGATTTGTGGGCAGAAGAAACAAAAAGTTTTTCTGGTTGCCGGCTATTGCTCCTCTTCTGTCAGTTATGTTATCAACTTTAATTGTGTATTTGTCGAAAGCTGATAAGAACGGGGTTAATATAATAAAGCACGTCAAAGGAGGCTTGAATCCAAGTTCAGTTCACCAATTACAATTCCACGGTCAACATGTCGGACAAGCAGCTAAAATTGGATTGATCTCTGCCGTTATTGCTCTTACTGAAGCAATAGCAGTTGGTCGATCTTTTGCTTCCATTAAGGGATACCATCTAGATGGGAACAAAGAAATGTTAGCAATGGGTTGCATGAACATTGCGGGATCCCTCTCTTCATGCTATGTGGCAACTGGTTCTTTCTCAAGGACTGCAGTAAATTTCACTGCAGGATGTCAAACATCAGTGTCAAATATTGTGATGGCTGTGACTGTGATTCTGTGTCTTGAATTGTTCACAAGGCTTCTATACTACACTCCTATGGCCATACTTGCCTCTATCATCCTCTCTGCACTTCCTGGACTAATTGACATTAGTGAAGCTTGCTATATTTGGAAGGTTGACAAATTAGACTTTCTTGCTTGCATTGGTGCCTTCTTCGGTGTATTGTTTGTATCGGTGGAAATTGGTCTTCTTGTTGCAGTGTCAATCTCATTTGCAAAGATACTAATACAATCAATTCGACCAGGGATAGAAATTCTAGGTAGAGTTCCAAGAACAGAAGCCTTCTGCGATGTTAGTCAATATCCCATGGCCTTAAGCACTCCAGGAATCTTAGTGATTCGCATAAGCTCTGGCTCACTCTGCTTTGCAAATGCTAACTTTGTGAGAGAAAAAATACTAAAGTGGGTCACGGAAGAAGAAAACGAGCGGGCCAAGGGAAGGGTTCGAGCAGTAATCATTGACATGAGCAACCTGATGAATGTTGACACTTCTGGGATTCTAGTACTGGAGGAACTGCACAAGAGGTTGCTTTCGCGTGGCGTACAATTGGCAATGGTCAATCCAAGGTGGCTAGTGATTCAGAAGCTCAAAGTGGCACACTTTGTGGATAAAATCGGAAAGGAATGGGTTTTCCTGACTGTTGCTGAAGCAGTAGATGCATGTCTATCTTCTAAATTCCCTGACCCATGA 1962 0.4241 MSSSPSMNMSQQELFHVEETSQVERSLWVLNPPNPPPLWNKLFGPLKKTVSFFSSKKKTCVGHSVSFLESLFPILSWFKNYKASKFKDDLLAGLTLASLSIPQSIGYANLARLDPQYGLYTSVVPPLIYALMGSSREIAIGPVAVVSLLLSSLVPKVVDPAVDPDAYRNVVFTVTLFAGIFQTAFSVFRLGFLVDFLSHAALVGFMAGAAIIIGLQQLKGLLGISHFTNKTDVISVLESVYKSLHQQITSGEKWYPLNFVIGCSFLIFLLTSRFVGRRNKKFFWLPAIAPLLSVMLSTLIVYLSKADKNGVNIIKHVKGGLNPSSVHQLQFHGQHVGQAAKIGLISAVIALTEAIAVGRSFASIKGYHLDGNKEMLAMGCMNIAGSLSSCYVATGSFSRTAVNFTAGCQTSVSNIVMAVTVILCLELFTRLLYYTPMAILASIILSALPGLIDISEACYIWKVDKLDFLACIGAFFGVLFVSVEIGLLVAVSISFAKILIQSIRPGIEILGRVPRTEAFCDVSQYPMALSTPGILVIRISSGSLCFANANFVREKILKWVTEEENERAKGRVRAVIIDMSNLMNVDTSGILVLEELHKRLLSRGVQLAMVNPRWLVIQKLKVAHFVDKIGKEWVFLTVAEAVDACLSSKFPDP 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01207 653 CDD STAS_SulP_like_sulfate_transporter 525 638 - -
Cca03g01207 653 ProSitePatterns SLC26A transporters signature. 115 136 IPR018045 GO:0008271|GO:0008272
Cca03g01207 653 SUPERFAMILY SpoIIaa-like 530 645 IPR036513 -
Cca03g01207 653 TIGRFAM sulP: sulfate permease 73 641 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cca03g01207 653 ProSiteProfiles STAS domain profile. 541 645 IPR002645 -
Cca03g01207 653 Gene3D STAS domain 504 648 IPR036513 -
Cca03g01207 653 Pfam STAS domain 525 641 IPR002645 -
Cca03g01207 653 PANTHER SULFATE TRANSPORTER 14 652 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cca03g01207 653 PANTHER SLC26A/SULP TRANSPORTER-RELATED 14 652 - -
Cca03g01207 653 Pfam Sulfate permease family 86 472 IPR011547 GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01207 Cca-Chr3 28755333 28759981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01207 21 649 Inorganic Solute Cotransporters AT5G10180 62.754 0.0 817
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01207 K17469 - gmx:100805269 1144.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01207 03 28755333 28759981 Cca03g01207 03 28755333 28759981 ECH
Cca05g01033 05 26922285 26927975 Cca03g01207 03 28755333 28759981 PCT