Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01204 ATGTCAATGTCGTCGTCGAATTCGCCGTGCGCGGCGTGCAAGATTCAGCGGCGGAAGTGCACGCAGGAGTGCGTGTTCGCGCCGTACTTTCCGCCGGACAACCCGCAGCGGTTTGCCTACGTGCACAAGGTGTTCGGCGCAAGCAACGTGGCCAAACTCCTCAACGAGCTTAACGCGGCGCAGCGCGAGGACGCCGTCAAGTCCCTCGCCTACGAGGCAGAGGCGCGTCTCCGGGACCCCGTGTACGGCTGCGTCGGCCTCATCTCCATCCTCCAGCACCGCCTCAAGCAGCTCCAGACCGAACTCAACCACGCCAAGAGCGAACTCGCCTCTTACATCGGCCCCCACGCTCTCCTCCCTCCCACACCTTCCcctccgccgcctccgccgccgcagcagcAACGCACTTTCTCTCTCTTCCCCTTCGGATTCCACGAGGATGGCCCTTCTCCTTCCCACTCCGCCTTCAACCTCGCCGATCACGCTTTTCCTCACGCGCCCTCGCACCCTCTTCCTCTTCCGCATCACCAGCACCTTATGCGCTCGCAAATGCACCCCAAGTCCCAAACCGACCCTGCTTAG 582 0.5945 MSMSSSNSPCAACKIQRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELNAAQREDAVKSLAYEAEARLRDPVYGCVGLISILQHRLKQLQTELNHAKSELASYIGPHALLPPTPSPPPPPPPQQQRTFSLFPFGFHEDGPSPSHSAFNLADHAFPHAPSHPLPLPHHQHLMRSQMHPKSQTDPA 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01204 193 MobiDBLite consensus disorder prediction 115 135 - -
Cca03g01204 193 MobiDBLite consensus disorder prediction 150 193 - -
Cca03g01204 193 MobiDBLite consensus disorder prediction 118 135 - -
Cca03g01204 193 Pfam Lateral organ boundaries (LOB) domain 9 106 IPR004883 -
Cca03g01204 193 ProSiteProfiles LOB domain profile. 8 109 IPR004883 -
Cca03g01204 193 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 120 - -
Cca03g01204 193 Coils Coil 88 108 - -
Cca03g01204 193 PANTHER LOB DOMAIN-CONTAINING PROTEIN 6-RELATED 3 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01204 Cca-Chr3 28683778 28684801 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01204 3 135 AS2 family AT5G66870 75.188 1.09e-66 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca03g01204 LOB 1.7e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01204 - - ccaj:109810786 356.681