Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01195 ATGAAAATGGACATATACGAGCCATTTCAGCAAGTTAGCATGTGGGGGGACAGCTTTAAAGTTAATGGTGGCCTGAATTCAATTGCTTCCCCAATTTTAATGGTTGACACTAGTATGGAGAATAAGTCTGAGTATATTCCTCAAGAATCAAGAGAGCCTTCTGGAGCCGATCAAGAGACTACTAATAAAGATGTTAATAAGATGTTAAGACGCCTAGCTCAGAATCGAGAGGCCGCTAGGAAAAGTAGGCTGCGAAAAAAGGTTTATGTTAAGCAATTAGAATCAAGCCGCTTGAAACTATTGCAATTGGAACTGGAAATTGAGAAAGCAAGAAAGCAGGGTCTGTACATGGGCACTACGTTAGATGCCGGCTATATAGGGTCATCATCAGAAACAATAAACCCAGCAATTGTTGCTTTTGAATTTGAATATGGACAATGGGTTGAAGAGCAACAAAGGCGGAATGAAGAACTTAGACATGCATTTCAAACGCAAGCACCTGATGCACAGCTTCATGCACTGGTTCAGAGTGTCTTAAACCATTACTCAAGTCTTTTCCGAATGAAAGCAGATGCTGCAAAGGCTGATGTTCTCTACTTAATCTCTGGTGTGTGGAAAGCATCAGTGGAGCGCATTTTCCTTTGGATTGGAGGGTCCCGTCCATCACAGCTTCTAAATATCATCGTCCCACAACTTGAGTTTTTGACTGAGGAACAAATTAATAGAATTAACAACATCCGCCTATCATCTCAGCAAGCTGAAGATGCTCTTTCACAAGGACTGGAAAAACTTCAGCAGAGTTTGGTCAATGACATGGCAGTTGATCCATTGGGTGCAGGAAACTTGGGACTTCAGATGGCTCTTGCTATGGAGAAATTTGAGGCACTAGAGGGTTTTGTAAACCAGGCAGATCATCTTAGGCAACAAACTCTGCTGCACATGTCACGTGTCCTGTCAGCACAGCAAGCTGCTAGGGGCTTGCTGGCTCTTGGGGAATACTTTCACCGTCTTCGCACTCTTTGTTCTCTTTGGGCTGCTCGTCCATCTGAACTTCCATAA 1059 0.4325 MKMDIYEPFQQVSMWGDSFKVNGGLNSIASPILMVDTSMENKSEYIPQESREPSGADQETTNKDVNKMLRRLAQNREAARKSRLRKKVYVKQLESSRLKLLQLELEIEKARKQGLYMGTTLDAGYIGSSSETINPAIVAFEFEYGQWVEEQQRRNEELRHAFQTQAPDAQLHALVQSVLNHYSSLFRMKADAAKADVLYLISGVWKASVERIFLWIGGSRPSQLLNIIVPQLEFLTEEQINRINNIRLSSQQAEDALSQGLEKLQQSLVNDMAVDPLGAGNLGLQMALAMEKFEALEGFVNQADHLRQQTLLHMSRVLSAQQAARGLLALGEYFHRLRTLCSLWAARPSELP 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01195 352 ProSiteProfiles DOG1 domain profile. 137 347 IPR025422 GO:0006351|GO:0043565
Cca03g01195 352 Coils Coil 93 113 - -
Cca03g01195 352 SUPERFAMILY Leucine zipper domain 67 99 IPR046347 GO:0003700|GO:0006355
Cca03g01195 352 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 70 85 IPR004827 GO:0003700|GO:0006355
Cca03g01195 352 PANTHER FACTOR TGA7, PUTATIVE-RELATED 3 349 - -
Cca03g01195 352 Pfam bZIP transcription factor 67 101 IPR004827 GO:0003700|GO:0006355
Cca03g01195 352 Pfam Seed dormancy control 156 229 IPR025422 GO:0006351|GO:0043565
Cca03g01195 352 PANTHER TRANSCRIPTION FACTOR TGA9 3 349 - -
Cca03g01195 352 Coils Coil 62 82 - -
Cca03g01195 352 MobiDBLite consensus disorder prediction 43 64 - -
Cca03g01195 352 Gene3D - 66 116 - -
Cca03g01195 352 SMART brlzneu 62 123 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01195 Cca-Chr3 28498503 28503196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01195 3 350 Calmodulin-binding Proteins AT1G77920 53.315 3.13e-126 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Cca03g01195 DOG1 6.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01195 K14431 - gmx:100794268 585.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01195 03 28498503 28503196 Cca03g01195 03 28498503 28503196 ECH
Cca05g01017 05 26563349 26567525 Cca03g01195 03 28498503 28503196 PCT