Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01186 ATGCCTCGTCAACCTCAgccgccgccgccgccgcgcaaccaccaccaccaccaccaccagcaGCCGAGCTCTCTCAACGCCAAGCTCTGGCGAGCCTGCGTCGGAGGCCTCGTGGAAACCCCGACGCTGCATTCTAGGGTTTACTACTTCCCCCAGGGGCACTTCGAACAAGCCTCTTCCGCTCCGCGAAACCTAACCCCTCGCCTTCTAACCAGGCCCTACGTGCTCTGCCGCGTCGTCTCGGTTCAATTTCTCGCGGATCCCCTCACCGACGAGGTTTTCACCAAGCTCATTCTTCACCCTATCGTCGATTACTCTTCCGCCGCGGGGCCTTCTTCTGCTGCTGATAATAATCCTCAAAACGACGACGATGACGATAAGATTGAGTCGTTCGCCAAGATTCTCACGCCTTCCGACGCCAACAACGGGGGCGGCTTCTCCGTTCCCAGATTCTGCGCGGACTCCATCTTTCCGCCGCTGAACTTCAAGGACGACACGCCCACGCAGACGCTCGTCGTCACCGACGTGCACGGCCACTCCTGGGAGTTCCGCCACATCTACCGCGGCACGCCGCGCCGGCACTTGCTCACCACCGGCTGGAGCAAGTTCGTCAACAGCAAGAAGCTCGTCGCCGGAGACTCCGTCGTCTTCATGAAAAACTCCCGCGGGGAGAATTTCGTCGGGATTCGCCGCGCCACGCGCGGCGCCTCCGGCGCCGGGAAGTGGCGCCTgaggagcagggccgaggagggggaggccgacgccgaggcggaggaggaggCTGTGGTTGAGAGAGAGGTTTTCTCGAGGGACGGGAAGGGGAAGTTGCCGACGAAGGTGGTGGTGGAGGCGGCGGAGCTGGCGGTGCAGAACATGCCGTTTGAGGTTGTTTATTATCCCAAGGCTGGTTGGTCGGAGTTTGTGGTGAAATGTGAGGCGGTGGATGAAGCAATGAGCATCACTTGGAGCCCTGGAATTAGAGTGAAGATGCCCATTGAGACCGAGGATTCGTCGAGGACGACGTGGTTTCCGGGTGTGGTCACTTCTGTCTCTTTTAACGATAACGGCAAGTGGCGCGGTTCTCCATGGCGCATGCTTCAGATTTTATGGGATGAACCTGAAGTGTTGCAGCATGCAAAGTGGGTCAGCCCTTGGCAGGTGGAACTTGTTTCCAACACACCTGCACTTCATTCAGCATTCCCCCCAACAAAAAAGTTTAGAGCTGCTGATGGTTCTGGGGTGTTTACTGAAGGGGAGGGAGGCCCCTTTTCTATGACAGAATTCACTAATTCAGCAATGGGACACATGAATCCGGCATTTCTGAGTTATGGTACTTATCCTGCTGGCATGCAGGGAGCCAGGCATGATGTATTTTCTGCATCAAGTTTTTCCAACTATCCTCGTGACATGTCTCGTCTGTGTATGGGTATTTCGTTTGGGAACAATGCAGTTCCAATGGCGAAAACTTTGTCAACAGAGCTAAATGTTGGCAGCTCTCAATCTGATGAATTGTCTCCTGATAGCCGTAGTAGTCTCCATTCCTGTGACACAGAATTTGTTGGGAATCACAAATACAATCCAAGAAAACCTGGGTCTGTTTCATTTCAGCTATTTGGTGCAGTCATTCAAACAGAACAGCCTGATGAAATTGGTTTGGACAGTAATGGTTGCTCAGGAGATGGTGACCAATGCCAAAGAGCCTCAAGAGTTGAGGCTTGTTACTTGTGA 1728 0.5069 MPRQPQPPPPPRNHHHHHHQQPSSLNAKLWRACVGGLVETPTLHSRVYYFPQGHFEQASSAPRNLTPRLLTRPYVLCRVVSVQFLADPLTDEVFTKLILHPIVDYSSAAGPSSAADNNPQNDDDDDKIESFAKILTPSDANNGGGFSVPRFCADSIFPPLNFKDDTPTQTLVVTDVHGHSWEFRHIYRGTPRRHLLTTGWSKFVNSKKLVAGDSVVFMKNSRGENFVGIRRATRGASGAGKWRLRSRAEEGEADAEAEEEAVVEREVFSRDGKGKLPTKVVVEAAELAVQNMPFEVVYYPKAGWSEFVVKCEAVDEAMSITWSPGIRVKMPIETEDSSRTTWFPGVVTSVSFNDNGKWRGSPWRMLQILWDEPEVLQHAKWVSPWQVELVSNTPALHSAFPPTKKFRAADGSGVFTEGEGGPFSMTEFTNSAMGHMNPAFLSYGTYPAGMQGARHDVFSASSFSNYPRDMSRLCMGISFGNNAVPMAKTLSTELNVGSSQSDELSPDSRSSLHSCDTEFVGNHKYNPRKPGSVSFQLFGAVIQTEQPDEIGLDSNGCSGDGDQCQRASRVEACYL 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01186 575 Pfam B3 DNA binding domain 131 232 IPR003340 GO:0003677
Cca03g01186 575 MobiDBLite consensus disorder prediction 1 25 - -
Cca03g01186 575 Gene3D - 322 394 - -
Cca03g01186 575 ProSiteProfiles B3 DNA-binding domain profile. 131 233 IPR003340 GO:0003677
Cca03g01186 575 Pfam Auxin response factor 284 367 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cca03g01186 575 PANTHER AUXIN RESPONSE FACTOR 20 563 - -
Cca03g01186 575 SMART B3_2 131 233 IPR003340 GO:0003677
Cca03g01186 575 CDD B3_DNA 130 231 IPR003340 GO:0003677
Cca03g01186 575 SUPERFAMILY DNA-binding pseudobarrel domain 125 238 IPR015300 -
Cca03g01186 575 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 20 563 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cca03g01186 575 Gene3D - 128 233 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01186 Cca-Chr3 28366059 28369784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01186 25 563 B3 DNA Binding Superfamily AT1G77850 46.715 3.08e-164 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Cca03g01186 B3 1.6e-24 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01186 - - gmx:102662128 740.725
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01186 03 28366059 28369784 Cca03g01186 03 28366059 28369784 ECH
Cca05g01014 05 26488745 26493065 Cca03g01186 03 28366059 28369784 PCT