Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01181 ATGACCGGGGGCCGATGTCACCCGTCGAAGAGCATGGCGGAGGGAGGGGATGCTGCCGCCATGGAGAGGCCCTGCCAGTCTAATTTTCCGGCAGAAACGCCTCGCCACGCCGCCGTGCACGAGATTGATTACTTGTCGCAGGCTAGGAAAACACTCAGCGAGCGTTCACCGTTCGACGCTGCTGAAGAAACATCAACTTCCGCAGCGGCTCATTCTGCTGGGGATAAGAGAAAATCTTCCTCTAGGGCAAACCAGAAGAAGGCAGAGACTTCTAACATTTGGATTGAAACGGAGGAATACTTTAGGGACTTGACTTTGGCTGATATCGACACCTTGTTTGAGGCCTCTTGCACTTCTAGTTTAGCGTCTCAGGACTGTTTCTCCATTCCGCTATTGGGAAATGCTCCGAGGTACAATGCAGTTACTACTACTAGTGAGAATGATATGGATCCTGTTCCAAAATTCAATGTAGTTAGTAGTGTGGATGAAAAGAAGGACGGCTTAGTTACTAGTGAGGATGGAAAAAAGGATGGCTTAGTTAGTAGGGAGGATGAAAAGAAGGGCGGTGAAGCTGTGGGAAATGAGGACGAATTGTTCGTTATTGAGGCAATTGACCCTGTTGCTGTTGAACAAGCTTGTCCACAGAATGACAAGAGTCAGGATATTTCTGATTCCTCTATTAGTTTAGAGTGGTTTTTAGGTTGCAGGAATAAAATTTCTTTAACTTCTGAGCGCCCTACCAAGAAAAGGAGGCTTTTTGGGGGCGAAGCTGGTTTGGAAAAAGTTATGATGACTTGTCCTTGTGATGATAGCCAACCATTTTGCCATTATTGCGGCAGGGGAGACATTGGGAGAGATTCCAATAGGTTAATTGTATGCACTTCTTGTAAAGTGGCAGTGCACAGGAAGTGCTATGGTGTGCAAGAAGATGTAGACGAGTCTTGGCTATGCTCCTGGTGCAAGCAAAAGGGTGATGTTGATGAGTCGACGAATCCTTGTGTTCTTTGTCCAAAGAAGGGTGGTGCATTGAAACCAGTTACTAGCAGCGTGGAAGGTGCCAGGTCTGTCCCGTTTGTGCACTTGTTTTGCTCTCTGTGGATGCCTGAGGTTTATATAGATGATTTGAAGAACATGGAACCTGTTATGAATGTGGGACGAATCAAGGAAACCCGGAAGAAATTAGTGTGCAGTGTTTGCAAAATGAAGTGTGGTGCATGTGTTCGGTGTAGCCATGGAAGCTGCAGAACTTCTTTCCACCCTTTATGTGCAAGGGAAGCTAGCCATAGAATGGAGGTTTGGGCAAAGTATGGTAATGATAATGTTGAGTTGAGGGCTTTTTGTGTGAAACACTCAGATCTACCAGAGAACAGAAGCGTCTTGCCATTGGAAGGCTCTATCACGGTTAGAAATGAATTTTCAGAAGCCAATGGTTGTCCAGAGACATTCCCAGTGAGTGGTGAAAACAACTTGAAAGATCGCAGGAATGGAGAATTAGCCTCCAATAGTAGTCCCGACAAATTGAATCATAATGATGAACCACCAGATGGAGGATTATCTGATTGCAGGTTAAGTGGTCATGACATGCAGTTTAACCACCAGAATGTTGGTGCATCTGACTCTCTCGGTTTTGCACTTGTTTTGAAGAAGTTGATTGATCGAGGAAAAGTTGATGCAAAAGATGTAGCATTGGAGATTGGCATTTCACCTGATACATTAACTGCAAATAACAATGAAGCATATATGGCCCCTGATGTGCAACAAAAAATAGTCAATTGGCTAAAAGCCCATGTGTATACTGGTGCATTTCAGAAAGGTTTAAAAGTCAAATTCAAACCAGCCAATGCATCCAAAAATGATAGTGCAGCCACAGATGGTTCTGATACTTTACCAATATCAGATTCGGGTTTGCTGGATCCTGTTGCTGTTAAGTCTGTTCCACCAAGGAGAAGAACCATCAGTAACATTAGGATTTTGAAGGATAATAAAGTGCTAGGTTCATCTGAGGGGGTTACTTGTGAGAATGGGGTGCCAGTGGACATTTGCCGAGTAGGTCAGTCTGACTGTGACAATTCAGTGAGTGCCAATGAAACATCCATTCCCAATGCAACTGAAATGAACTTAACCAAGTCTGAGGATATTTCTCATGAAGTTCAAGGCAAGGCTGATAAACCTTACAAAACCTGCTTTTCTGGACATGTCTCAGAAGACAAGTCTACTGCTTGTTTGGAAAATGCTTCTATGGTTTCTGATCAGCATTGTCTTGTTCATTCTGCTTCAGAACCACCTGATTCTGGTTTCATAAAGAAGGATGCAATCTCTAGTTACATTCATCCATACATCAACAAGAAATTGATGCAGATTCGTGATGGGGTGCCCTTGGATGACATTATATGTGATTCAAGTGATGAGGGAAATTCTTCTTTGGTTCAGCCCTTAGGGGCTAGTGGCAGCTCAAGTAGCCAAAACCAGAACTTAACTTGCATTGACATTTCAAAGCCTGATGAAGTTAATATGGAGCAATTGGTTAGGGCTAGAAAAATGGGACTTTTGGAATTTTCTCCACAAGATGAATTGGAGGGGGAACTTGTTTATTTTCAGTATAGATTATTGCAGAATGCAGTTGCAAAAAAGAGGCATATTGATAACTTAATCCACAGTGTTGCTAAGAGTTTGCCACTAGAGATTGATAAGGCACATCAACGAAGATGGGATGATGTCATTGTTAATCAATATCTACGCGATCTTAGAGAGGCAAAAAAACAGGGCCGAAAAGAAAGAAAGCACAAGGAAGCACAGgctgtgttggctgctgcaactgctgctgcagcagcATCTACCAGGGCTTTCCGGAAAGACACCTTAGATGAATCCTTGCAACAAGAGAATCTGTTAAAATTGGATGCTCTAAATGGAAGGACTGGTGCTTGTTCTCAGCCAATGCCTCGAGCCAAAGAGACACTTTCAAGAGTAGCTGTGACAAGAACTTCCTCAGAGAAATATTCGGATTTTTGCATGCCATCATCAGATTTTTCTAAGGAACAATTTAAATCATGTGATATTTGCAGACGATCAGAGACTATATTAAACCCTATCCTAGTCTGCTCTGGTTGCAAGGTTTCAGTTCACTTGGATTGCTATCGTAGTGTTAAAGAAACAACAGGTCCATGGTACTGTGAGTTATGTGAAGATTTGTCATCTAGAAGCTCTGGGGCATCTGCTATCAATTTCTGGGAGAAGCCTTATATTGTTGCAGAATGTGCTCTCTGTGGTGGTACTTCTGGTGCTTTTAGGAAGTCTTCTGATGGTCAATGGGTCCATGCCTTCTGTGCTGAGTGGGTTTTTGAGTCTACGTTCAGAAGAGGACAAATAGATGCTGTTGAAGGAATGGAAACTGTGTCAAAAGGAGTTGACATTTGTTGTATCTGCCACCGCAAGCATGGTGTATGCATGAAGTGTTGCTATGGCCATTGTCAGACCACATTCCATCCATCCTGTGCTAGAAGCGCTGGTTTGTACATGAATGTGAGGACTGCTGGTGGCAAGGCTCAACACAAAGCTTATTGTGAAAAACATAGTTTGGAGCAGAAGACAAAGGCTGAAACTCAAAAGCATGGAATTGAAGAGTTAAAAAGTATCAGGCAAATTAGGGTTGAATTAGAGAGATTACGTCTCCTTTGTGAAAGAATTGTCAAACGTGAAAAAATAAAGCGGGAATTGGTACTATGTTCACATGACATACTTGCCTTTAAAAGAGATCATGTTGCTAGGTCTATTCTGGTTCATAGCCCTTTCATCCTTCCAGATGGTAGTTCAGAATCAGCTACAACGTCCCTTAAAGGGAACACAGAGGGATACAGATCATGCAGTGAACCACTCCAAAGATCAGATGATGTTACTGTGGACAGTTCAGTTTCTGCTAAGCACCGTGTCAGAGTTGCCATTTCTATGGACACAGACCCAAAACTGGATGACGACTGCTCAACCTCTCAAAGTCACTATAACCACAAGATTCCAGAAAGAACGCAATTTTCTGGCAAGAAGATTCCTCATAGAGCTGCTGTATCACGTAATATTTCGGAGGAGGGTGGATGGAGATCCAAATCTAGAAAGCATGCCGAGACATTTGGAAAAGAGCTTGTTATGACGTCAGATGAAGCATCTATGAAGAATTCAATGCTACCTAAAGGATATGCATATGTTCATGCTGATTGCCTGTCAAATGACAAGCACTCTAACGAGGATGTATGTGCTAGTGGACCAGGGGAGCATGACAGAGATAGGGTTCTGGTCACTGAATTGTTGCAGAATGTTGCTATCTGCTCTGGCGGGGGCAAGTTTTGTTAG 4344 0.4268 MTGGRCHPSKSMAEGGDAAAMERPCQSNFPAETPRHAAVHEIDYLSQARKTLSERSPFDAAEETSTSAAAHSAGDKRKSSSRANQKKAETSNIWIETEEYFRDLTLADIDTLFEASCTSSLASQDCFSIPLLGNAPRYNAVTTTSENDMDPVPKFNVVSSVDEKKDGLVTSEDGKKDGLVSREDEKKGGEAVGNEDELFVIEAIDPVAVEQACPQNDKSQDISDSSISLEWFLGCRNKISLTSERPTKKRRLFGGEAGLEKVMMTCPCDDSQPFCHYCGRGDIGRDSNRLIVCTSCKVAVHRKCYGVQEDVDESWLCSWCKQKGDVDESTNPCVLCPKKGGALKPVTSSVEGARSVPFVHLFCSLWMPEVYIDDLKNMEPVMNVGRIKETRKKLVCSVCKMKCGACVRCSHGSCRTSFHPLCAREASHRMEVWAKYGNDNVELRAFCVKHSDLPENRSVLPLEGSITVRNEFSEANGCPETFPVSGENNLKDRRNGELASNSSPDKLNHNDEPPDGGLSDCRLSGHDMQFNHQNVGASDSLGFALVLKKLIDRGKVDAKDVALEIGISPDTLTANNNEAYMAPDVQQKIVNWLKAHVYTGAFQKGLKVKFKPANASKNDSAATDGSDTLPISDSGLLDPVAVKSVPPRRRTISNIRILKDNKVLGSSEGVTCENGVPVDICRVGQSDCDNSVSANETSIPNATEMNLTKSEDISHEVQGKADKPYKTCFSGHVSEDKSTACLENASMVSDQHCLVHSASEPPDSGFIKKDAISSYIHPYINKKLMQIRDGVPLDDIICDSSDEGNSSLVQPLGASGSSSSQNQNLTCIDISKPDEVNMEQLVRARKMGLLEFSPQDELEGELVYFQYRLLQNAVAKKRHIDNLIHSVAKSLPLEIDKAHQRRWDDVIVNQYLRDLREAKKQGRKERKHKEAQAVLAAATAAAAASTRAFRKDTLDESLQQENLLKLDALNGRTGACSQPMPRAKETLSRVAVTRTSSEKYSDFCMPSSDFSKEQFKSCDICRRSETILNPILVCSGCKVSVHLDCYRSVKETTGPWYCELCEDLSSRSSGASAINFWEKPYIVAECALCGGTSGAFRKSSDGQWVHAFCAEWVFESTFRRGQIDAVEGMETVSKGVDICCICHRKHGVCMKCCYGHCQTTFHPSCARSAGLYMNVRTAGGKAQHKAYCEKHSLEQKTKAETQKHGIEELKSIRQIRVELERLRLLCERIVKREKIKRELVLCSHDILAFKRDHVARSILVHSPFILPDGSSESATTSLKGNTEGYRSCSEPLQRSDDVTVDSSVSAKHRVRVAISMDTDPKLDDDCSTSQSHYNHKIPERTQFSGKKIPHRAAVSRNISEEGGWRSKSRKHAETFGKELVMTSDEASMKNSMLPKGYAYVHADCLSNDKHSNEDVCASGPGEHDRDRVLVTELLQNVAICSGGGKFC 1447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01181 1447 MobiDBLite consensus disorder prediction 479 520 - -
Cca03g01181 1447 Pfam PHD-zinc-finger like domain 332 450 - -
Cca03g01181 1447 Pfam PHD-zinc-finger like domain 1085 1191 - -
Cca03g01181 1447 MobiDBLite consensus disorder prediction 168 189 - -
Cca03g01181 1447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 330 453 IPR013083 -
Cca03g01181 1447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1083 1193 IPR013083 -
Cca03g01181 1447 ProSiteProfiles Extended PHD (ePHD) domain profile. 1083 1192 IPR034732 -
Cca03g01181 1447 SUPERFAMILY FYVE/PHD zinc finger 267 338 IPR011011 -
Cca03g01181 1447 MobiDBLite consensus disorder prediction 1 33 - -
Cca03g01181 1447 MobiDBLite consensus disorder prediction 52 89 - -
Cca03g01181 1447 ProSiteProfiles Zinc finger PHD-type profile. 272 323 IPR019787 -
Cca03g01181 1447 Coils Coil 912 932 - -
Cca03g01181 1447 Pfam PHD-finger 1029 1062 - -
Cca03g01181 1447 Pfam PHD-finger 288 321 - -
Cca03g01181 1447 MobiDBLite consensus disorder prediction 52 74 - -
Cca03g01181 1447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 329 IPR013083 -
Cca03g01181 1447 ProSiteProfiles Extended PHD (ePHD) domain profile. 330 451 IPR034732 -
Cca03g01181 1447 ProSiteProfiles Zinc finger PHD-type profile. 1015 1064 IPR019787 -
Cca03g01181 1447 SUPERFAMILY FYVE/PHD zinc finger 1009 1062 IPR011011 -
Cca03g01181 1447 SMART PHD_3 1017 1062 IPR001965 -
Cca03g01181 1447 SMART PHD_3 395 451 IPR001965 -
Cca03g01181 1447 SMART PHD_3 1138 1192 IPR001965 -
Cca03g01181 1447 SMART PHD_3 274 321 IPR001965 -
Cca03g01181 1447 CDD ePHD 1086 1191 - -
Cca03g01181 1447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1007 1067 IPR013083 -
Cca03g01181 1447 PANTHER PHD FINGER PROTEINS 78 459 - -
Cca03g01181 1447 PANTHER PHD FINGER PROTEINS 783 1421 - -
Cca03g01181 1447 PANTHER PHD-FINGER DOMAIN CONTAINING PROTEIN FAMILY-RELATED 78 459 - -
Cca03g01181 1447 PANTHER PHD-FINGER DOMAIN CONTAINING PROTEIN FAMILY-RELATED 783 1421 - -
Cca03g01181 1447 ProSitePatterns Zinc finger PHD-type signature. 1018 1061 IPR019786 -
Cca03g01181 1447 MobiDBLite consensus disorder prediction 1270 1293 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01181 269 457 C2H2 Transcription Factor Family AT3G14740 28.125 2.73e-15 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Cca03g01181 zf-HC5HC2H_2 7.1e-24 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01181 - - gmx:100775631 2335.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01181 03 28300344 28312912 Cca03g01181 03 28300344 28312912 ECH