Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01174 ATGAATCGCCTATCTCGGATTTTTGACCACAGCAACCAAACCAACACCATGGACCGCAAGAACCCGCGCCGCAAGCCCAGGCTCGAGCGCCGCAACGCCCTCAAGTACTCCGAATACGACGCCGCATCGTCTTCCTCCTCGCTCGACGACGCGCTCTACACGCGCTCCATGGAGTTCTACGACCGCACCAGTTTCCGAATTGAAGGCGTCGAGGGCGAGTTCGATCGAATTTGTCGCAGCTTGGGCCTCTCCGGCCCGGAGGACTTCGCTATTCCCGCCGCGGCGTGGGAGGCCATGAAGTTTCGTTCCTCTTCGGATATTCTCCCCAGGCTGAAGCTCGACAACCTCGAAATTCaggaggacgaagaggagaaagaggagaggaAAATAGATTCGGCAGAGGAAGGTGAATCGAGTGGAGAATGCGGAGATAATAAGGTTAGGGTTAGGGTTAGGGAAGTAGATGATTCTAGCGAGTGCTGCAGTGGTATTAAGGGGGTTCGGCCGCCGATGCTGAAGCCGCCGCCGGGGGTGAAGGTTACGGCGGTGGATAGCGCGTGTTCCACGTGGGACCTTTTGAGGGAGTTGGCGCCGCAAGGGGAAGGGTATCCGGTGAACCATTCCGACGAAGAGAGGGAAGTGGAGAGAGGAGACGCGGTGAAGGAGGAAGGGGAGGTTGGTGGAGTGAGTCCGAAGAGAGAAGAGGAAGGGAATGTGGATAATGGGGCGAGGATTGCGGAGATTGTTGCGGGGCTTTCTGAGTCGAGTTTGTTTTCCACTTCCAATGAAGATGATTCTTCTAGTAGCACCACGGACCCTAAGTCCACGAACATTTCTCCCAACACGAGGATCAAGCGTATTATTACTGCCGGTAGCTGGCAGAAGGGTGAGTTCTTAGGGGGTGGCTCGTTTGGTTCCGTTTATGAAGGAATTTCTGACGATGGATTCTTTTTTGCCATAAAAGAAGTTTCACTACTTGCTCAAGGGAATCAGGGAAAGCAAAGTATCTATCAACTGGAGCAGGAAATAGCACTTTTGAGTCAGTTTGAGCACGAGAATATTGTTCAATACTATGGCACAGAAATGGACGAATCAAAGCTGTATATCTTTCTTGAGCTTGTAACCAAAGGTTCCCTTAGAAGCCTCTATCAGAAGTATACGCTTCGAGATTCCCAAGTATCTGCATATACCAGGCAGATTCTGCATGGTTTGAAGTATCTTCATGATCGAAATGTGGTTCACAGGGATATTAAATGTGCAAATATATTGGTGGATGCAAGTGGATCAGTCAAGCTTGCAGATTTTGGATTGGCGAAGGCAACCAAATTGAATGATGTTAAATCAATGAAGGGGACAGCATACTGGATGGCTCCTGAGGTTGTAAAAGGAAAAAACCAAGGTTATGGGCTTCCAGCTGATATGTGGAGTCTGGGATGCACTGTACTGGAAATGTTAACAGGGCAACTTCCATACTCTAATTTGGAATTTATGCAGGCATTATTTAGAATTGGAAAAGGTGAGCGACCTCCTGTTCCAGACTCCCTTTCAAGCGACGCGCGGGATTTTATCCTGCAGGCCGGAGAGGTTAAACTATATGTCATTTTCAAATATGAAACATTATGGAGGGTCCATTACTGCAGCAATTTGTTGATTTGCTCGTGTTGTAGCATTTGGAGTTTGCTTGCCTGCAACTTGTATCAACTTTCGAGCGCTGCTTTGGATCTAACACAACGTGAGCGCGAAGATCGGACGCACGCTCCGATTCCCTTCATTTTCTCCGTTTCAACCAAACGACTCCTCTCAACCGCTTCTTCAAGAATTCCAGTTCCAGTTTTAGGTTCAGTTTGTAAATGGCTAAAGTTGGAAAGCTGCGGTGCAAGTCTCAATCTCGAGAGCTCTTCTAAAGCATCAGAAAAGCAAGATTGGGATGATTCAACCTGCTCAGTCTGTATGGAGGTCCCCCATAATGCTATCCTTCTCCTATGTTCATCTTATGACAAGGGTTGTCGCCCTTACATGTGTGCTACTAGTAATCGCTATTCAAACTGTTTTGAACAATACAAAAAGGCGTATACTAAAGAAACATCTGTTCAAAATTTGCCGCTAGAAGCAAACAATTCAAATTTTGATTTAAGCACAGGTGAATCTAAAGACAATGCTGAAGTTCCTCAGCTTCTTTGCCCCCTTTGTCGCCGGCAGGTGAAAGGTTGGACAGTGGTTGAAGCAGCACGAAAGTCTCTGAATGCCAAGAAAAGAAGTTGCATGCAAGATGATTGCTCCTTTGTAGGGAATTACAAGGAGCTTAGGAAACATGTTAGGTGTAAGCATCCATTTGCACGGCCACGAGAAGTGGACCCAATAAGAGAAGAAAAATGGAAGAGATTTGAATGTGAAAGAGAACGGAATGATGTGATTAGCACAATTTTATCTTCATCACCAGGGGCTGTGGTACTGGGGGATTATGTGCTGGAGCCAAATGACCATGCCTTTTATAGtgacgatgatgattatgattctcatgaggaatatatagaggatgatTTCTTCTCAGTCAGGTCCATTGGTTTGGGGAGAACTGGCCGCTTTTTGCCAAACATTATGTATAATCAGGACCGTGCTGCTGATTCTTTCGATGTTGATCGTATTGGTTTGCAGAGTGTTGCATCTACAGGTTCTGCTGCTGTCTCTGGGCGTGGACTCCAGAGGTTATTGTTAGGAAGGTCTAGAAGACGACGGAGGGATAGGAGGATAGCAAACGCAAGAAGGTAA 2769 0.459 MNRLSRIFDHSNQTNTMDRKNPRRKPRLERRNALKYSEYDAASSSSSLDDALYTRSMEFYDRTSFRIEGVEGEFDRICRSLGLSGPEDFAIPAAAWEAMKFRSSSDILPRLKLDNLEIQEDEEEKEERKIDSAEEGESSGECGDNKVRVRVREVDDSSECCSGIKGVRPPMLKPPPGVKVTAVDSACSTWDLLRELAPQGEGYPVNHSDEEREVERGDAVKEEGEVGGVSPKREEEGNVDNGARIAEIVAGLSESSLFSTSNEDDSSSSTTDPKSTNISPNTRIKRIITAGSWQKGEFLGGGSFGSVYEGISDDGFFFAIKEVSLLAQGNQGKQSIYQLEQEIALLSQFEHENIVQYYGTEMDESKLYIFLELVTKGSLRSLYQKYTLRDSQVSAYTRQILHGLKYLHDRNVVHRDIKCANILVDASGSVKLADFGLAKATKLNDVKSMKGTAYWMAPEVVKGKNQGYGLPADMWSLGCTVLEMLTGQLPYSNLEFMQALFRIGKGERPPVPDSLSSDARDFILQAGEVKLYVIFKYETLWRVHYCSNLLICSCCSIWSLLACNLYQLSSAALDLTQREREDRTHAPIPFIFSVSTKRLLSTASSRIPVPVLGSVCKWLKLESCGASLNLESSSKASEKQDWDDSTCSVCMEVPHNAILLLCSSYDKGCRPYMCATSNRYSNCFEQYKKAYTKETSVQNLPLEANNSNFDLSTGESKDNAEVPQLLCPLCRRQVKGWTVVEAARKSLNAKKRSCMQDDCSFVGNYKELRKHVRCKHPFARPREVDPIREEKWKRFECERERNDVISTILSSSPGAVVLGDYVLEPNDHAFYSDDDDYDSHEEYIEDDFFSVRSIGLGRTGRFLPNIMYNQDRAADSFDVDRIGLQSVASTGSAAVSGRGLQRLLLGRSRRRRRDRRIANARR 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01174 922 Pfam Protein kinase domain 294 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01174 922 MobiDBLite consensus disorder prediction 199 241 - -
Cca03g01174 922 MobiDBLite consensus disorder prediction 1 30 - -
Cca03g01174 922 MobiDBLite consensus disorder prediction 256 281 - -
Cca03g01174 922 MobiDBLite consensus disorder prediction 1 15 - -
Cca03g01174 922 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 60 529 - -
Cca03g01174 922 ProSiteProfiles Protein kinase domain profile. 293 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01174 922 MobiDBLite consensus disorder prediction 118 146 - -
Cca03g01174 922 ProSitePatterns Serine/Threonine protein kinases active-site signature. 412 424 IPR008271 GO:0004672|GO:0006468
Cca03g01174 922 SMART serkin_6 293 540 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01174 922 ProSitePatterns Protein kinases ATP-binding region signature. 299 321 IPR017441 GO:0005524
Cca03g01174 922 Gene3D Transferase(Phosphotransferase) domain 1 291 531 - -
Cca03g01174 922 Pfam Protein of unknown function (DUF1644) 643 806 IPR012866 -
Cca03g01174 922 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 60 529 - -
Cca03g01174 922 Coils Coil 113 136 - -
Cca03g01174 922 SUPERFAMILY Protein kinase-like (PK-like) 267 530 IPR011009 -
Cca03g01174 922 MobiDBLite consensus disorder prediction 205 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01174 Cca-Chr3 28125098 28144628 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01174 27 529 MAP Kinase Kinase Kinase AT4G08500 50.178 8.90e-146 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Cca03g01174 Pkinase 1e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01174 K13414 - gmx:100819999 806.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01174 03 28125098 28144628 Cca03g01174 03 28125098 28144628 ECH