Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01172 ATGGCGGCTTCAGTCCACCAGCGTCCGTACGCCGCTCTCCAGCACGGCGTCGTTCGGGCCTTCAAGCCATCCCCGTCCCCGGACATGCCGCGTCCCAAGAAGCTACCCCAACCGCCGCCACTCTCCGATTCCTCGAGCGACGACGAAGACCACGCCGCCACCTTCAAGGACCTGATTCGTAACGCGGAAGTGGAAGCCTCCGTTTTGGACCCGCGCGACGACGGAACCTCCGACCACTGGATCGAACGGAACGCTTCCCTGTTCCGTTTAACGGGGAAGCACCCTTTCAACTCGGAGCCGCCCCTCCCCCGCCTCATGCACCACGGCTTCATCACCCCCGTCCCCCTCCACTACGTCCGCAACCACGGGCCCGTTCCCCGGGCCCGCTGGGAGGACTGGACCGTGGAGGTGACGGGCCTCGTCGCCCGGCCCACGCGCTTCACCATGGACCAGCTGCTCCGCGACTTCCCCAGCCGCGAGTTCCCCGCCACGCTCGTGTGCGCTGGGAACCGCCGCAAGGAACAGAACATGCGCTGCGGGATCTACTCCCGCACCAAGGGCGCGCTCCACGTGTGCTTCGAAGGCGCCGAGGATTTGCCAGGTGGCGGTGGCTCCAAGTACGGGACCAGTATCATGAGGGAGGTTGCACTCGATCCCTCCCGCGACATCATCCTCGCTTACATGCAAAACGGGGAGCGTTTGACGCCCGATCACGGTTTCCCCGTTAGGATGATTATACCCGGTTTTATTGGAGGCCGCATGATCAAGTGGTTGAAGCGCATCATTGTCACTACCCAACAATCTCAAAGTTATTACCATTACCAGGACAACAGGGTTCTACCTTCTCACGTGGATGCCGAACTTGCCAATGCAGAAGCTTGGTGGTACAAGCCAGAGTATATTATCAACGAGCTTAACATAAACTCTGTCATAACCACACCCTGCCACGATGAGATCTTGCCCATCAACTCATGGACTACTCAGATACCTTATTTGCTCAGAGGTTACGCGTATTCTGGTGGTGGGAGAAAGGTAACACGTGTGGAAGTAACCCTGGACGGTGGTGAAACGTGGCAAGTGTGCACGCTGGACTGTCCGGAGAAACCCAACAAGTACGGAAAGTACTGGTGTTGGTGTTTCTGGTCCTTGGAGGTGGAGGTTTTGGACCTGCTTGGAGCCAAGGAGATTGCGGTGCGCGCTTGGGACGAGGCCCTCAACACCCAGCCTGAGAAGCTCATTTGGAATGTTATGGGCATGATGAACAACTGTTGGTTCAGAGTGAAAACGAATGTGTGCAAGGCCCACAAGGGTGAGATTGGAATAGTGTTCGAGCACCCCACCCAAGCAGGCAACCAATCTGGCGGCTGGATGGCCAAAGAAAAACACTTGGAGAAATCATCGGAGTCAAACCCAATCCTCAAGAAGAGTGTCTCCTCCCCATTCATGAACACAACCTCAAAAACCTATTCCATCTCCGAAGTCAGAAAGCACAACAGCCCCGACTCCGCTTGGATCATCGTCCACGGCTACGTCTACGACTGCACCCGCTTCCTCAAAGACCACCCCGGTGGCACCGACAGCATCCTCATCAACGCCGGCACCGACTGCACCGAGGAGTTCGAAGCCATCCACTCCGACAAAGCCAAGAAAATGCTCGAGGACTACCGGATCGGCGAGCTCATGACCACCGGTTACACCTCCGATTCTTCATCGCCAAACACCACCGTGCATGACGCCACCCATTTGGCCCCCATCAAGGAAGTCACACCGCAACGCAGCGTGGCCCTCACCCCACGGGAGAAAACCCCATGCAAGCTCCTCTCCAAAACATCCCTCTCCCACGACGTTAGGCTCTTCCGCTTCTCGTTACCCTCAGAGGACCAACTCCTGGGCTTGCCCGTAGGGAAGCACTTATTCCTATGCGCCACCGTGGACGAGAAGCTATGCATGCGAGCCTACACGCCAACAAGCAGCGTGGATGAAGTGGGGTACTTCGACCTCGTCGTCAAGGTTTACTTCAGAGGCGTGCACCCCAAGTTCCCCAACGGTGGCCTCATGTCTCAGCATTTGGACTCGCTTCCCATTGGCTCCGTCTTGGACGTGAAAGGCCCACTGGGCCACATAGAATACACCGGCAGAGGAAACTTCCTGGTTCATGGCAAACCAAGGTTTGCCACGAGGCTGGCCATGTTGGCTGGTGGCACCGGGATCACGCCCATTTACCAAGTGGCTCAAGCCATTCTGAAGGACCCAGAGGACCGCACCCAAATGCATGTGGTGTACGCGAACCGAACCCAGGATGATATATTGCTGAGGGAAGAGCTTGATGATTGGGCTCAGAAGCATGACAGGTTCAAGGTGTGGTACGTCGTACAAGAAAGCTTAAGAGAAGGGTGGGAATACAGTGTGGGGTTCATCACGGAAAGTATCCTGAGGGAGCATGTTCCGCACGCATCTCCTGATACCTTGGCGTTGACCTGTGGACCACCACCCATGATTCAGTTCGCAGTGCAGCCCAACTTGGAGAAGTTGGGCTACGACATCCAGAACAACTTGCTCGTGTTTTAG 2568 0.5674 MAASVHQRPYAALQHGVVRAFKPSPSPDMPRPKKLPQPPPLSDSSSDDEDHAATFKDLIRNAEVEASVLDPRDDGTSDHWIERNASLFRLTGKHPFNSEPPLPRLMHHGFITPVPLHYVRNHGPVPRARWEDWTVEVTGLVARPTRFTMDQLLRDFPSREFPATLVCAGNRRKEQNMRCGIYSRTKGALHVCFEGAEDLPGGGGSKYGTSIMREVALDPSRDIILAYMQNGERLTPDHGFPVRMIIPGFIGGRMIKWLKRIIVTTQQSQSYYHYQDNRVLPSHVDAELANAEAWWYKPEYIINELNINSVITTPCHDEILPINSWTTQIPYLLRGYAYSGGGRKVTRVEVTLDGGETWQVCTLDCPEKPNKYGKYWCWCFWSLEVEVLDLLGAKEIAVRAWDEALNTQPEKLIWNVMGMMNNCWFRVKTNVCKAHKGEIGIVFEHPTQAGNQSGGWMAKEKHLEKSSESNPILKKSVSSPFMNTTSKTYSISEVRKHNSPDSAWIIVHGYVYDCTRFLKDHPGGTDSILINAGTDCTEEFEAIHSDKAKKMLEDYRIGELMTTGYTSDSSSPNTTVHDATHLAPIKEVTPQRSVALTPREKTPCKLLSKTSLSHDVRLFRFSLPSEDQLLGLPVGKHLFLCATVDEKLCMRAYTPTSSVDEVGYFDLVVKVYFRGVHPKFPNGGLMSQHLDSLPIGSVLDVKGPLGHIEYTGRGNFLVHGKPRFATRLAMLAGGTGITPIYQVAQAILKDPEDRTQMHVVYANRTQDDILLREELDDWAQKHDRFKVWYVVQESLREGWEYSVGFITESILREHVPHASPDTLALTCGPPPMIQFAVQPNLEKLGYDIQNNLLVF 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01172 855 Pfam Mo-co oxidoreductase dimerisation domain 300 431 IPR005066 GO:0016491|GO:0030151
Cca03g01172 855 Gene3D - 180 303 IPR036374 -
Cca03g01172 855 PANTHER NITRATE REDUCTASE 178 855 - -
Cca03g01172 855 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 517 524 IPR018506 GO:0020037
Cca03g01172 855 Pfam Oxidoreductase NAD-binding domain 730 837 IPR001433 GO:0016491
Cca03g01172 855 Gene3D - 482 563 IPR036400 -
Cca03g01172 855 PIRSF Nitr_rd_NADH 18 178 IPR012137 GO:0006809|GO:0042128|GO:0050464
Cca03g01172 855 PIRSF Nitr_rd_NADH 177 854 IPR012137 GO:0006809|GO:0042128|GO:0050464
Cca03g01172 855 CDD cyt_b5_reduct_like 604 855 - -
Cca03g01172 855 MobiDBLite consensus disorder prediction 1 51 - -
Cca03g01172 855 PRINTS Cytochrome B5 signature 521 535 IPR001199 -
Cca03g01172 855 PRINTS Cytochrome B5 signature 536 543 IPR001199 -
Cca03g01172 855 PRINTS Cytochrome B5 signature 548 560 IPR001199 -
Cca03g01172 855 PRINTS Cytochrome B5 signature 511 521 IPR001199 -
Cca03g01172 855 Pfam Cytochrome b5-like Heme/Steroid binding domain 492 560 IPR001199 -
Cca03g01172 855 PANTHER NADH-CYTOCHROME B5 REDUCTASE 48 177 IPR001834 GO:0016491
Cca03g01172 855 PANTHER NADH-CYTOCHROME B5 REDUCTASE 178 855 IPR001834 GO:0016491
Cca03g01172 855 SUPERFAMILY Riboflavin synthase domain-like 594 711 IPR017938 -
Cca03g01172 855 CDD eukary_NR_Moco 73 429 - -
Cca03g01172 855 Gene3D - 304 479 - -
Cca03g01172 855 PRINTS Cytochrome B5 reductase signature 767 778 - -
Cca03g01172 855 PRINTS Cytochrome B5 reductase signature 630 641 - -
Cca03g01172 855 PRINTS Cytochrome B5 reductase signature 696 710 - -
Cca03g01172 855 PRINTS Cytochrome B5 reductase signature 729 748 - -
Cca03g01172 855 PRINTS Cytochrome B5 reductase signature 651 658 - -
Cca03g01172 855 PRINTS Cytochrome B5 reductase signature 823 831 - -
Cca03g01172 855 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 486 561 IPR001199 -
Cca03g01172 855 PANTHER NITRATE REDUCTASE 48 177 - -
Cca03g01172 855 MobiDBLite consensus disorder prediction 25 39 - -
Cca03g01172 855 ProSitePatterns Eukaryotic molybdopterin oxidoreductases signature. 139 174 IPR022407 GO:0043546
Cca03g01172 855 Gene3D - 72 179 IPR036374 -
Cca03g01172 855 Pfam Oxidoreductase molybdopterin binding domain 122 180 IPR000572 -
Cca03g01172 855 Pfam Oxidoreductase molybdopterin binding domain 186 272 IPR000572 -
Cca03g01172 855 PRINTS Eukaryotic molybdopterin domain signature 218 234 IPR008335 GO:0016491
Cca03g01172 855 PRINTS Eukaryotic molybdopterin domain signature 399 411 IPR008335 GO:0016491
Cca03g01172 855 PRINTS Eukaryotic molybdopterin domain signature 96 112 IPR008335 GO:0016491
Cca03g01172 855 PRINTS Eukaryotic molybdopterin domain signature 412 425 IPR008335 GO:0016491
Cca03g01172 855 PRINTS Eukaryotic molybdopterin domain signature 333 347 IPR008335 GO:0016491
Cca03g01172 855 PRINTS Eukaryotic molybdopterin domain signature 251 264 IPR008335 GO:0016491
Cca03g01172 855 PRINTS Eukaryotic molybdopterin domain signature 302 314 IPR008335 GO:0016491
Cca03g01172 855 PRINTS Eukaryotic molybdopterin domain signature 235 248 IPR008335 GO:0016491
Cca03g01172 855 PRINTS Eukaryotic molybdopterin domain signature 347 359 IPR008335 GO:0016491
Cca03g01172 855 PRINTS Eukaryotic molybdopterin domain signature 374 384 IPR008335 GO:0016491
Cca03g01172 855 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 484 564 IPR036400 -
Cca03g01172 855 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 698 850 IPR039261 -
Cca03g01172 855 Gene3D Translation factors 591 705 - -
Cca03g01172 855 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 599 711 IPR017927 GO:0016491
Cca03g01172 855 SUPERFAMILY Oxidoreductase molybdopterin-binding domain 71 302 IPR036374 -
Cca03g01172 855 SMART Cyt_b5_2 489 561 IPR001199 -
Cca03g01172 855 SUPERFAMILY E set domains 304 431 IPR014756 -
Cca03g01172 855 Pfam Oxidoreductase FAD-binding domain 604 710 IPR008333 -
Cca03g01172 855 Gene3D - 706 855 IPR039261 -
Cca03g01172 855 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 729 748 IPR001709 GO:0016491
Cca03g01172 855 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 823 831 IPR001709 GO:0016491
Cca03g01172 855 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 651 658 IPR001709 GO:0016491
Cca03g01172 855 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 799 815 IPR001709 GO:0016491
Cca03g01172 855 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 520 530 IPR001709 GO:0016491
Cca03g01172 855 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 755 764 IPR001709 GO:0016491
Cca03g01172 855 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 767 778 IPR001709 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01172 Cca-Chr3 28080466 28085147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01172 591 846 NADPH P450 reductases AT5G17770 40.927 1.07e-51 181
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01172 03 28080466 28085147 Cca03g01172 03 28080466 28085147 ECH