Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01171 ATGGCGCAAACGCTGGCAATGCCCGTGGCACCTTCCCTCGCTATCATCTCCAATGCTCGCCTCACCAACACAGTTTCGCTTCCCGTTCTGAACACAAAGGTTCCTGGGCTGAGCATAAAGTGCGTTCGTGTCGGCGGTGTGGAGATTCCGAACAATAAGAGAATCGAGTATTCATTGCAGTACATTCATGGAGTTGGAAGAACGAGAGCGCGACAAATCCTGTGTGATATCAGCATGGACAACAAACTCACGAAGGACCTCTCTGAGGAGGAGCTCATCACTCTCAGAGACGAGGTCTCCAAATACATGATTGAAGGAGACTTGAGACGGTTCAATGCGATTAATGTGAAGAGACTGAAGGACATCCAGTGCTACAGAGGAATAAGGCACATTCAGGGGCTTCCTTGCAGAGGCCAGCGAACCAAGAACAATTGCAGGACCTTGAAGGGTAAGAAGGTTGCTATTGCCGGCAAAAAGAAAAAGTAA 486 0.4897 MAQTLAMPVAPSLAIISNARLTNTVSLPVLNTKVPGLSIKCVRVGGVEIPNNKRIEYSLQYIHGVGRTRARQILCDISMDNKLTKDLSEEELITLRDEVSKYMIEGDLRRFNAINVKRLKDIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKK 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01171 161 Hamap 30S ribosomal protein S13 [rpsM]. 41 157 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Cca03g01171 161 PANTHER 37S RIBOSOMAL PROTEIN SWS2, MITOCHONDRIAL 1 160 IPR019980 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Cca03g01171 161 ProSiteProfiles Ribosomal protein S13 family profile. 44 150 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Cca03g01171 161 Gene3D - 42 110 - -
Cca03g01171 161 Gene3D 30s ribosomal protein s13, domain 2 111 161 IPR027437 -
Cca03g01171 161 ProSitePatterns Ribosomal protein S13 signature. 126 139 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Cca03g01171 161 SUPERFAMILY S13-like H2TH domain 42 153 IPR010979 GO:0003676
Cca03g01171 161 TIGRFAM uS13_bact: ribosomal protein uS13 43 152 IPR019980 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Cca03g01171 161 Pfam Ribosomal protein S13/S18 43 147 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Cca03g01171 161 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 1 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01171 Cca-Chr3 28073007 28073910 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01171 13 159 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 29.480 4.06e-07 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01171 K02952 - gmx:100500355 271.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01171 03 28073007 28073910 Cca03g01171 03 28073007 28073910 ECH