Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01167 ATGGATGGGAAGCCTAACCCGGATTCCTCCTCCCCGGACTTCCTCCGCCACGTTCAAGCCGCCCTGAAACGACACCGTCCCCTCGGTACAATGCACTCCAATTCCATAAGGCCACGTCGCACGCTGCTTCCTCAGCGAACCAACTCTCAACAACAACCACCACCACCTTCTTCTCACAACCTAGATCCTCACAAGAAAGTCCACTTTTCAACTCCAACCACCACTGCTTCGCAGGAAATGGAGTGGGTTGAAGGCAACCAAGTTGAAGCGTCGTCGTCGATTGGATTCCACCAGCAAGGGAATGTTCAGAAGGTAGGGTTTGACGCCAGTTTGAGAAGTGATAGTGGAGTGCCCAAGAGAAGTGTGGCTTCTCAGGATAATTTGCAGCAATTCAGAAGTTTTTTGAGTCAGCCAGCGACGCAATCTTCTTGTGCTACAACCACCTCGGTTCATTCCACTTCAGCGCCCATGCTGAATTCAACAACGCGGTATTCCCATTCGCATCAAGACGGTGGCTCGAGTGTGGCTGCTGAGTCCTTGGGGGAGGTTAATGTTAATCCCCGTCCTATGAATGATGGGGTTGTGAAATCAGTTAGTGTTTCCAATAGAATGTCGGTTGATTGCGCAGAAGCTGAAGTTCAAGCTTCTGGTTCTTGTATTGGTGGTGCAGTGTTGGCATCTCAGGAGAGCGATCTATCTAAGGAGCAACAAGGGGGTATGTTAAAAGAAACTGGCAATTATTGTGATGATGGTAAAGGGAAAGAGGCTGTGGATGTTGCCACCATCCAACCTCAGGCTCCACCTCCCACAACCACAACCGCAACTTCATCTTCAGATGTGAAGTTGGAGGCTTCTAAGGTGGAAAAACGGGAGAAGGCCGCAAGTAGTAAAGGTGCATCAGCTGCCCGGAAAAGGACTTATGACCCTGATTTGTTTTTCAAAGTCAATGGCAAACTTTATCAGCGTCTTGGCAAGATAGGTAGTGGTGGAAGTAGTGAGGTTCACAAAGTGATTTCATCGGACTGTAGGATCTATGCACTTAAAAAGATCAAGCTCAAGGGTCGTGATTATGCAACTGCATATGGGTTTTGTCAAGAGATTGAATATCTAAATAGGCTGAAGGGAAAGGATAACATCATACAGCTTATAGATTATGAGGTGACTGACAAGGCTTTGCTTGAGGAAGTTATGAAAGGCTCCTTCAGTAATAAAGATGGTCGGGTGAAGGATGATGGATGTATATACATGGTACTTGAATATGGGGAAATTGATTTGGCTCACATGTTGTCTCAGAAGTGGAAGGAACTGGATCGAAGCAATCAGACCATAGATGAGAACTGGCTTAGATTTTATTGGCAGCAAATTCTTCTTGCTGTCAACACTATTCATGAAGAACGTATAGTGCACTCAGACTTGAAGCCAGCCAACTTCCTACTTGTCAAAGGTTCCCTAAAACTGATTGACTTTGGTATAGCCAAAGCAATAATGAATGACACAACCAACATCCAAAGGGATTCACAGGTGGGCACTCTAAGTTACATGTCTCCAGAGGCATTCATGTGTAATGAGGCTGATGCGAACGGAAACATTATAAAGTGTGGTCGGTCATCAGATATCTGGTCCCTGGGTTGCATCCTTTATCAAATGGTGTACGGGAGAACACCTTTTTCTGATTACAAGACATTTTGGGCCAAATTCAAAGTTATTACAGATCCAAATCATGAAATTACGTATGAACCAGTTTCAAACTCATGGCTTTTGGATCTTATGAAGAGGTGTCTAGCATGGGATCGCAATCAAAGGTGGAGAATTCCTCAGCTACTCCAACATCCTTTTCTTGTTCCTCCTGTACCATGTCATTCATCTTTGGCCCAAGATCATAGCTGTAAATTGCTACAATTTATTTCTGAAACTTGTACATATGACCCAGAAGCATCCCAACTGTGTAGTCGGCTTCAACTGCTTCTTAGTGATCCACCCGAGAAAACAACTCACTCATTAAATTCACTAGATCAACAACTAAAACTGCTGTCCCAAATGTCAGAACTCTGTATTCAGCTGCACGAACGTTTGTCAAATACCGAAAACAAGTAG 2094 0.4475 MDGKPNPDSSSPDFLRHVQAALKRHRPLGTMHSNSIRPRRTLLPQRTNSQQQPPPPSSHNLDPHKKVHFSTPTTTASQEMEWVEGNQVEASSSIGFHQQGNVQKVGFDASLRSDSGVPKRSVASQDNLQQFRSFLSQPATQSSCATTTSVHSTSAPMLNSTTRYSHSHQDGGSSVAAESLGEVNVNPRPMNDGVVKSVSVSNRMSVDCAEAEVQASGSCIGGAVLASQESDLSKEQQGGMLKETGNYCDDGKGKEAVDVATIQPQAPPPTTTTATSSSDVKLEASKVEKREKAASSKGASAARKRTYDPDLFFKVNGKLYQRLGKIGSGGSSEVHKVISSDCRIYALKKIKLKGRDYATAYGFCQEIEYLNRLKGKDNIIQLIDYEVTDKALLEEVMKGSFSNKDGRVKDDGCIYMVLEYGEIDLAHMLSQKWKELDRSNQTIDENWLRFYWQQILLAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMNDTTNIQRDSQVGTLSYMSPEAFMCNEADANGNIIKCGRSSDIWSLGCILYQMVYGRTPFSDYKTFWAKFKVITDPNHEITYEPVSNSWLLDLMKRCLAWDRNQRWRIPQLLQHPFLVPPVPCHSSLAQDHSCKLLQFISETCTYDPEASQLCSRLQLLLSDPPEKTTHSLNSLDQQLKLLSQMSELCIQLHERLSNTENK 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01167 697 MobiDBLite consensus disorder prediction 282 301 - -
Cca03g01167 697 CDD PKc_Mps1 318 613 - -
Cca03g01167 697 PANTHER MIXED LINEAGE PROTEIN KINASE 6 664 - -
Cca03g01167 697 ProSiteProfiles Protein kinase domain profile. 320 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01167 697 ProSitePatterns Protein kinases ATP-binding region signature. 326 348 IPR017441 GO:0005524
Cca03g01167 697 SMART serkin_6 320 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01167 697 Gene3D Transferase(Phosphotransferase) domain 1 433 616 - -
Cca03g01167 697 MobiDBLite consensus disorder prediction 34 55 - -
Cca03g01167 697 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Cca03g01167 697 MobiDBLite consensus disorder prediction 264 281 - -
Cca03g01167 697 MobiDBLite consensus disorder prediction 24 76 - -
Cca03g01167 697 Gene3D Phosphorylase Kinase; domain 1 313 399 - -
Cca03g01167 697 MobiDBLite consensus disorder prediction 262 301 - -
Cca03g01167 697 PANTHER DUAL SPECIFICITY PROTEIN KINASE TTK 6 664 IPR027084 GO:0004712|GO:0007093|GO:0051304
Cca03g01167 697 SUPERFAMILY Protein kinase-like (PK-like) 314 619 IPR011009 -
Cca03g01167 697 Pfam Protein kinase domain 320 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01167 Cca-Chr3 27990006 27995163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01167 326 614 MAP Kinase Kinase Kinase AT4G08470 29.592 1.94e-24 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TTK Cca03g01167 Pkinase 1e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01167 K08866 - gmx:100780144 1080.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01167 03 27990006 27995163 Cca03g01167 03 27990006 27995163 ECH