Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01166 ATGAGcaaactcaaaacccaaagaaaacaaaccattaccaaacatgtcagccaaaaccaaaaccaaGTGCCACAGAAAACAGAGAAACAACCTTCATGGGTGGTAAGAGGCCTATTGGCTTGTAGAAATGTCCAAATCCAACAACACCATCATCAGCAGAAGGAAGCAAAATCGCCCCCAGAAGAAAAACAACATGGCAAAAAACAAGAACAGCGAAAGCTGCAAGAGGAACGAGTCTCAGAAGAGAACAGCAAGAAGTGCAAGAAGATGAAATGCTCAGGCTCACTTTGTAACAACACTAAGATCACGGAAAAGTCTGACACAGCAACCCCGGATATCCACAAGAAAAGGTTGTCACTAAGTGGATGCAACAACAACAACAACGATGCTTCCAGCAGATCCATGAAAGCACCTCTTAATGAAATCAATGGACCCGTGTCTGCCTCCTCTTCTTCACTGTCAGCATCTTCAACTTCTTCTGGCGGTGGCTCTTTCAGGTCAATGCCATTCAGGAGACTCTCCGGTTGTTATGAGTGTAGAATGGTGGTAGACCCGGTTCTTGGCTTCACTAGAGACCCTTCTCTTAGGAGCAGCATTTGTTCTTGCCCTGACTGTGGTGAGATCATGAAAGCTGAAAGCTTGGAACATCACCAGGCTGTCAAACATGCAGTTTCTGAGCTGGGTCCAGAAGACACGAGCAAGAACATAGTCGAAATAATATTCCACTCGAGCTGGCTGAAGAAGCAATCTCCAGTGTGCAAAATAGACCGCATCCTGAAGGTCCATAACACTCAGAAGACCATAAGCAAATTCGAAGAGTACAGAGACTCCATAAAAGCCAAAGCCACGAAACTCTCAAAGAAACACCCTCGATGCATAGCAGATGGCAACGAGCTACTCAGGTTCCACTGCACCTCCTTTGCGTGCTCCCTAGGCCTAAACGGGTCCTCCAACTTGTGCCACTCGATACCACAGTGCCACGTGTGCAGCATAATCAAGCATGGGTTCAAGGTCACCGGAGGAACCGGTATCTTGACGACGGCAACGAGTGGGAGGGCTCACGACAAGGCGTGTGTGGACGAGAGTGAGGACAAGAGGGCAATGCTGGTTTGTCGGGTGATAGCAGGCAGGGTGAAGAAGAATGCAGAAGGTGGCATGGAGGAGTATGATTCTGTTGCAGGGGCTGTTGGGGCCTATTCTAATTTGGATGAGTTGTTTGTGTTTAATCCACGAGCTATATTGCCTTGCTTTGTTGTAATCTATAGAGGCTTTTGA 1275 0.4549 MSKLKTQRKQTITKHVSQNQNQVPQKTEKQPSWVVRGLLACRNVQIQQHHHQQKEAKSPPEEKQHGKKQEQRKLQEERVSEENSKKCKKMKCSGSLCNNTKITEKSDTATPDIHKKRLSLSGCNNNNNDASSRSMKAPLNEINGPVSASSSSLSASSTSSGGGSFRSMPFRRLSGCYECRMVVDPVLGFTRDPSLRSSICSCPDCGEIMKAESLEHHQAVKHAVSELGPEDTSKNIVEIIFHSSWLKKQSPVCKIDRILKVHNTQKTISKFEEYRDSIKAKATKLSKKHPRCIADGNELLRFHCTSFACSLGLNGSSNLCHSIPQCHVCSIIKHGFKVTGGTGILTTATSGRAHDKACVDESEDKRAMLVCRVIAGRVKKNAEGGMEEYDSVAGAVGAYSNLDELFVFNPRAILPCFVVIYRGF 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01166 424 MobiDBLite consensus disorder prediction 48 85 - -
Cca03g01166 424 MobiDBLite consensus disorder prediction 11 29 - -
Cca03g01166 424 Gene3D - 223 422 - -
Cca03g01166 424 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 36 422 - -
Cca03g01166 424 MobiDBLite consensus disorder prediction 1 31 - -
Cca03g01166 424 SUPERFAMILY ADP-ribosylation 224 423 - -
Cca03g01166 424 MobiDBLite consensus disorder prediction 119 164 - -
Cca03g01166 424 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 36 422 - -
Cca03g01166 424 MobiDBLite consensus disorder prediction 46 85 - -
Cca03g01166 424 MobiDBLite consensus disorder prediction 117 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01166 Cca-Chr3 27981655 27983620 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01166 165 422 C2H2 Transcription Factor Family AT1G75710 54.795 9.40e-102 308
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01166 03 27981655 27983620 Cca03g01166 03 27981655 27983620 ECH