Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01158 ATGGACGCCACGGAGGCCCTCACTGGTGCCACCAAGAGCCGCGAGCTGGCTCGAGTGATATTGGTTCGGCTCAAGGAGTTGGTGTCCCACGCGGCGCACGCCTCCAACATGGAGAGGTTGGCCGCGTACTTCACCGACGCGCTCCAGGGCCTGCTAGAAGGCGCAAGGGGTGCGCACAATAACAACACCAGGCATCATCCTATTCATTATCATCAAAACAACACCCTCGCGACGTTTCAACTGCTTCAGGACATGTCACCCTACATCAAGTTTGGACACTTCACAGCGAACCAGGCCATCCTGGAGGCCGTGGCCCACGAGCGCCGAGTACACATCGTCGACTATGACATCATGGAAGGGGTCCAGTGGGCCTCCCTCATGCAGGCCCTCGCCTCCAACAAAACAGGCCCACCCGCGCCGCACCTCCGAATCACAACATTGTCCCGCACTGGCACTGCCCGGAGGTCCATCACCTCCGTGCAGGAGATCGATCGCTGCTTGATCGCCTTCGCCGCCTCCCTCGGCCAGCCCTTCGCCTTCCACCAGTGCAGGTTGGACTCCGACGAAACGTTTCACACTTCCTCTCTCAAAGTGGTTCGCGGAGGCGGAGCCGGAGAGGCTTTGGTCTTCAACTGCATGCTGAACTTGCCACACCTTAGTTACCGTGCACCTGATTCGGTGGCCTCGTTTTTGAGCGGGGCGAAGGCGTTGAAGGCCAAGCTGGTGACCGTGGTGAAGGAGGAAGAGGAGGTGGGGTCCAGTGTGGGAGGGTTCGTGGGAAGGTTCATGGACTCGCTGCATCACTACTCGGTCGTGTTTGACTCACTGGAGGCTCGGTTTCCGATGTAG 849 0.5948 MDATEALTGATKSRELARVILVRLKELVSHAAHASNMERLAAYFTDALQGLLEGARGAHNNNTRHHPIHYHQNNTLATFQLLQDMSPYIKFGHFTANQAILEAVAHERRVHIVDYDIMEGVQWASLMQALASNKTGPPAPHLRITTLSRTGTARRSITSVQEIDRCLIAFAASLGQPFAFHQCRLDSDETFHTSSLKVVRGGGAGEALVFNCMLNLPHLSYRAPDSVASFLSGAKALKAKLVTVVKEEEEVGSSVGGFVGRFMDSLHHYSVVFDSLEARFPM 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01158 282 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 281 IPR005202 -
Cca03g01158 282 PANTHER SCARECROW-LIKE PROTEIN 26 1 281 IPR030028 -
Cca03g01158 282 Pfam GRAS domain family 10 281 IPR005202 -
Cca03g01158 282 ProSiteProfiles GRAS family profile. 1 282 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01158 Cca-Chr3 27821127 27821975 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01158 15 280 GRAS Transcription Factor Family AT3G54220 36.194 2.96e-35 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca03g01158 GRAS 2.4e-68 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01158 - - gmx:100787926 413.305