Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01156 atggagatggagatagacatgatggacatggaTACTATCCACAACCTCGACTTCTCCGGATACAGCACCATCACCAACACCACCCCCTCTTCCGAAGACGACTACGCTTACTGCACCTGGAACCACTGGTCCCCCCTCGTCAACTGGGACGCCTTAACCGCCACCCCGGACGACTTCCACCACCTCCTCGACTCCATCGTCAGTGACGGCGCCGTCGAGGACAACCTCAGCCCCGACAACGTCGGAAGCAACTCCGTGACGGAGGAAGAGGATTTGAAGGGTCTGAGACTGGTCCACCTCCTGATGGCCGCCGCGGAGGCCCTCACCGGCGCCACCAAGAGCCGCGAGCTGGCTCGAGTGATATTGGTTCGGCTCAAGGAGTTGGTGTCCCACTCGGCGCACGCCTCCAACATGGAGAGGCTGGCCGCGTACTTCACCGACGCGCTCCAGGGCCTGCTAGAAGGCGCAGGGGGTGCGCACAATAACAACACCAGGCATCATCCTAATCATTATCATCAAAATGACACCCTCGCGGCGTTCCAATTGCTTCAGGACATGTCACCCTACGTCAAGTTTGGACACTTCACAGCGAACCAGGCCATCCTGGAGGCCGTGGCCCACGAGCGCCGAGTCCACATCGTCGACTATGACATCATGGAAGGGGTCCAGTGGGCCTCCCTCATGCAGGCCCTCGCCTCCAACAAAACAGGCCCACCCGCGCCGCACCTCCGAATCACAGCATTGTCCCGCACCGGCACCGGCACTGCCCGAAGGTCCATCGCCTCCGTGCAAGAGACTGGCCGCCGCTTGACCGCCTTTGCCGCCTCCCTCGGCCAGCCCTTCTCCTTCCACCAGTGCAGGTTGGACTCCGACGAAACGTTTCGCACTTCCTCTCTCAAAGTGGTTCACGGAGGCGGAGCCGGAGAGGCTTTGGTCTTCAACTGCATGCTGAACTTGCCACACCTTAGTTACCGTGCTCCTGATTCAGTGGCCTCGTTTTTGAGTGGGGCGAAGGCGTTGAAGGCCAGGCTGGTGACCGTGGTGGAGGAGGAAGAGGAGGCGGGGTCCAATGTGGGAGGGTTCGTGGGAAGGTTCATGGACTCGCTGCATCACTACTCGGCCGTGTTTGACTCGCTGGAGGCTGGATTTCCGATGCAGAGCCGAGCCAGGGCCCTTGTGGAGCGCGTTTTCTTGGGTCCCCGGATAGCTGGGTCGTTGGGCCGTATATACCGGACGGGGGAAGAGGAGGAGAGGGGGTCCTGGGGGGAGTGGTTGGGTGCGGCGGGGTTCAGGGGAGTTCCCCTAAGCTTCGCTAATCATTGCCAAGCGAAGCTTTTGCTGGGCCTTTTCAACGACGGATACAGAGTGGAGGAGTTGGGGAGTAATAAGTTGGTGTTGGATTGGAAATCTAGGCGCATGCTTTCTGCTTCACTTTGGACTTCTTCCCCAGATTCTCATTAA 1461 0.5852 MEMEIDMMDMDTIHNLDFSGYSTITNTTPSSEDDYAYCTWNHWSPLVNWDALTATPDDFHHLLDSIVSDGAVEDNLSPDNVGSNSVTEEEDLKGLRLVHLLMAAAEALTGATKSRELARVILVRLKELVSHSAHASNMERLAAYFTDALQGLLEGAGGAHNNNTRHHPNHYHQNDTLAAFQLLQDMSPYVKFGHFTANQAILEAVAHERRVHIVDYDIMEGVQWASLMQALASNKTGPPAPHLRITALSRTGTGTARRSIASVQETGRRLTAFAASLGQPFSFHQCRLDSDETFRTSSLKVVHGGGAGEALVFNCMLNLPHLSYRAPDSVASFLSGAKALKARLVTVVEEEEEAGSNVGGFVGRFMDSLHHYSAVFDSLEAGFPMQSRARALVERVFLGPRIAGSLGRIYRTGEEEERGSWGEWLGAAGFRGVPLSFANHCQAKLLLGLFNDGYRVEELGSNKLVLDWKSRRMLSASLWTSSPDSH 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01156 486 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 8 480 IPR005202 -
Cca03g01156 486 Pfam GRAS domain family 97 480 IPR005202 -
Cca03g01156 486 ProSiteProfiles GRAS family profile. 88 480 IPR005202 -
Cca03g01156 486 PANTHER SCARECROW-LIKE PROTEIN 26 8 480 IPR030028 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01156 Cca-Chr3 27808205 27810117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01156 88 480 GRAS Transcription Factor Family AT3G54220 37.845 3.58e-54 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca03g01156 GRAS 7.1e-100 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01156 - - gmx:100782300 755.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01156 03 27808205 27810117 Cca03g01156 03 27808205 27810117 ECH