Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01151 atGTCATTGAGTCCTCCAAGAGACAGAAACAACAATGCTCAACCTCAACCGAGAACGTTCCAGCTCTACTGGTGCTTCCAGTGCAACCGCACGGTCCGCGTCGCACCGGATAACACCACCGAGGTGGCATGCCCACGCTGCCACGGCCAATTCATATGCGAAATAAACGTGCCCAGGCCAAGACTCGTCGTGGATTTCACCACCCCAGACCCTTCCCCAGAAGCGCGTTTGCTCGAAGCGCTTTCCCTCATGATGGACCCACCCATACGCCGCTTCCCGGGTCTAATGCAACCCGAACCACAAGAAATccccgtccacaggcgccgaacccgaacccgaacccgacgtcccgagcccgaaccccaccccgaccgccgcccccgcaccTGGATCGTCTTCCAGCCCATCGACCCCTCCAACGCCTTCCAGCCCATTAACAACATCTCAGGCCCAATCCCCATCCCGCACGGCCCAGGCCCAATCCCCCGCGGAGTGGACGCGCGCGACTACTTCCTCGGGCCCGGACTCAACGAACTGATCGACCAGTTAACCGAGAACGACCGGCAGGGCCCTCCGCCGGCGCCGGAGAGAGCGATCGACGCCATTCCGGCGGTGAAGATCGAGAGCGCGCATCTGAAGGAGAATTCTCGGTGTCCGGTTTGTCAGGAGGAATTCGAAGTGGGTGGCGAAGCGAGGGAACTTGCGTGCAAGCACATTTATCACTCCGATTGCATTGTTCCCTGGCTCAGGCTTCACAACTCTTGCCCTGTGTGCCGCCACGAGGTGCCTGTGCCGTCTTCTTCCTCCGAGGACGATGACTGCGTCGCCGATGATCGCCGAGAAGGTTTCGACGGGTTTATCCTCAACCAGATAATAATGTTGCTGCTGCTTCTTCTTCCAGGGCATCTAACTGGAGACACAACTCTTGCTGTATTCTTTAAGCTCTGCGGCGATGACTCACGTTCAAGAGCTGGTTGGAATTCTGACTTGTTTGTAAAGCCGTCATGCTCACCGGGGGAACCCGGGCTTGCGATTCAAAAATTAAGTAAATAA 1053 0.5214 MSLSPPRDRNNNAQPQPRTFQLYWCFQCNRTVRVAPDNTTEVACPRCHGQFICEINVPRPRLVVDFTTPDPSPEARLLEALSLMMDPPIRRFPGLMQPEPQEIPVHRRRTRTRTRRPEPEPHPDRRPRTWIVFQPIDPSNAFQPINNISGPIPIPHGPGPIPRGVDARDYFLGPGLNELIDQLTENDRQGPPPAPERAIDAIPAVKIESAHLKENSRCPVCQEEFEVGGEARELACKHIYHSDCIVPWLRLHNSCPVCRHEVPVPSSSSEDDDCVADDRREGFDGFILNQIIMLLLLLLPGHLTGDTTLAVFFKLCGDDSRSRAGWNSDLFVKPSCSPGEPGLAIQKLSK 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01151 350 Pfam zinc-ribbon 21 55 IPR039525 GO:0061630
Cca03g01151 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 181 265 IPR013083 -
Cca03g01151 350 SMART ring_2 218 258 IPR001841 -
Cca03g01151 350 PANTHER - 14 281 - -
Cca03g01151 350 ProSiteProfiles Zinc finger RING-type profile. 218 259 IPR001841 -
Cca03g01151 350 MobiDBLite consensus disorder prediction 92 127 - -
Cca03g01151 350 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 14 281 - -
Cca03g01151 350 SUPERFAMILY RING/U-box 198 265 - -
Cca03g01151 350 Pfam Ring finger domain 217 259 IPR001841 -
Cca03g01151 350 CDD RING-H2_RNF126_like 218 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01151 Cca-Chr3 27747793 27749893 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01151 190 273 C3H Transcription Factor Family AT1G68180 51.190 1.64e-24 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01151 K11982 - gmx:100787399 453.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01151 03 27747793 27749893 Cca03g01151 03 27747793 27749893 ECH