Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01142 ATGGGTACGTGGTTGACAAACGCAAAACCGTATCTGATGTTACTGGCTGTCCAATTTGGTTCTGCAGGCATGTTCATTTTGGCCATGGATGCTATAAAGAAGGGAATGAGCCATTATGTGTTCATTGTCTATCGCAATGCCATCGCCTCTATAACTCTCGCTCCCTTCGCATTTGTTCTAGAAAGGAAAGTTAGGCCCAAGATGACTATCAGGATATTTTCAGAGATTATGGCGCTGGCTTTCTTCGAAATAATACTGGATCAGTGTTTCGCCCTCTTGGGCATGAAATTCACGTCGGCATCTTTCCTATCTGCTGTCATGAACTCAGCACCCTCTGTTACTTTTTTGTTAGCAGTCATTCTAAGATTGGAGCACATGAAGATTAAGGAGGTAGCATGTCAAGCGAAAGTGATTGGGACAATAGTAACTTTTGGAGGCACCTTGCTAATGGCACTATACAAAGGCCCCATAGTTAGTGTTATGGGATCTTCATTCAGCCATAATGTGAACAACCCCACGCCCACTGGTAACCACTGGATCATGGGAACATGTTTCCTCCTCATTGGCTGTGCAGGCTTTTCTGCATTTTACATATTACAAACCATAACATTGAGAAAATACCCAACAGAGATGTCCCTTGCCACTTGGGTTTGCTTTTTTGGTGCACTTCAAAGCTCTGTTGTAGCAATCTTCGCAGAGCGTCACCACCCTCATGCATGGTCTCTTGGTTGGGATACAAGACTCTTTGCTCCTGCTTACGCGGGAGTAGTTACGTCTGGAGTTCAGTATTACATACAAGGCATGATCATAAAATCAATGGGCCCTGTTATTGTGACTGCTTTTAATCCCCTGCGTATGATCATTACTACTACCTTGGCATGCATCGTTCTCTCTGAGCAACTCTACCTTGGAAGTATTGTTGGAGCAATAGTTGTGGTTCTTGGGCTTTATCTAGTAGTGTGGGGAAAATCTAAAGAACGCAAAGGTCAGAGTCAGATGCTAACGTCCCCTGTGGAGGATAACTCTCAAGAAGACCAATGTCATCTACCGGTCACAGCTCCCAGCAATGATAACAAGGCTTAA 1083 0.4423 MGTWLTNAKPYLMLLAVQFGSAGMFILAMDAIKKGMSHYVFIVYRNAIASITLAPFAFVLERKVRPKMTIRIFSEIMALAFFEIILDQCFALLGMKFTSASFLSAVMNSAPSVTFLLAVILRLEHMKIKEVACQAKVIGTIVTFGGTLLMALYKGPIVSVMGSSFSHNVNNPTPTGNHWIMGTCFLLIGCAGFSAFYILQTITLRKYPTEMSLATWVCFFGALQSSVVAIFAERHHPHAWSLGWDTRLFAPAYAGVVTSGVQYYIQGMIIKSMGPVIVTAFNPLRMIITTTLACIVLSEQLYLGSIVGAIVVVLGLYLVVWGKSKERKGQSQMLTSPVEDNSQEDQCHLPVTAPSNDNKA 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01142 360 PANTHER WAT1-RELATED PROTEIN 7 351 IPR030184 GO:0016021|GO:0022857
Cca03g01142 360 SUPERFAMILY Multidrug resistance efflux transporter EmrE 217 326 - -
Cca03g01142 360 Pfam EamA-like transporter family 10 150 IPR000620 GO:0016020|GO:0016021
Cca03g01142 360 Pfam EamA-like transporter family 181 320 IPR000620 GO:0016020|GO:0016021
Cca03g01142 360 MobiDBLite consensus disorder prediction 329 360 - -
Cca03g01142 360 PANTHER WAT1-RELATED PROTEIN 7 351 - -
Cca03g01142 360 SUPERFAMILY Multidrug resistance efflux transporter EmrE 44 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01142 Cca-Chr3 27574225 27578156 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01142 2 356 Nodulin-like Gene Family AT1G44800 42.740 3.38e-107 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01142 - - gmx:102665912 605.905