Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01141 ATGTCCAGTGTTAAGTCCTCTGTAAAATTGGTATTGTTAGATGAAGCGGATGCCATGACGAAGGAAGCCCAATTTGCATTACGTAGAGTGATTGAGAAATATACAAAAAGCACTAGGTTTGCACTTATCTGTAATCATGTGAACAAGATTATTCCTGCACTTCAATCTAGATGCACTCGGTTCCGGTTTGCCCCTCTTGACGCTGTCCATGTCACTGAAAGACTGAAACATGTTATTAAGGCTGAAGGGCTTGATGTTCAAGAGAGTGGCTTAGCAGCTCTTGTTCGATTGAGCAATGGTGCAGTTCTTGGCGTCGGACGTGCATTCATCAAGGACCACCATTGTCAAATCACACCGGGCGCGAGGCTAGTTGAGCCGGGCGCAATTTGA 390 0.4538 MSSVKSSVKLVLLDEADAMTKEAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVIKAEGLDVQESGLAALVRLSNGAVLGVGRAFIKDHHCQITPGARLVEPGAI 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01141 129 Gene3D - 1 65 IPR027417 -
Cca03g01141 129 CDD AAA 5 65 - -
Cca03g01141 129 Pfam DNA polymerase III, delta subunit 2 66 - -
Cca03g01141 129 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 103 IPR027417 -
Cca03g01141 129 PANTHER REPLICATION FACTOR C SUBUNIT 5 6 100 - -
Cca03g01141 129 Gene3D - 69 102 - -
Cca03g01141 129 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 6 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01141 Cca-Chr3 27534543 27541274 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01141 5 100 Core DNA Replication Machinery Family AT1G77470 87.500 2.05e-53 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01141 K10756 - gmx:100805231 185.267