Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01137 ATGGGTAAGGGTTTGGCCAAGGAGCATGCGGCAGAAGCACCAGAAGAGATACCGCTAATGGGACCATTTGCAGGAGAGAACCCTGGAAGCCCTGTTGAAGGCACCAGTGAGGATTTGGGTGATGCTGGACCAAATCCATCAAACTCTGGTGATGGTGCTGGAGCAAACaccGAAAGAGGAAGAAGTGGAAAGTTTGTGTTCAAGTTTATACTGAAGAGAATGTTAGAACAACCCCAAACTTGTGTTGCTCTTAAGGGTGATGTTATGGACAATGCTGGCAATTCAGGGACATTTGCAAGAATTACTCCCAACAAAAGACACAAATCTAGAGGATGTTTAGTTCAAAAGGATGTTGTTCGAATAAATGATATTTCAGAAGGAAAAGAAAAATTTCCTATTCGGGTGGTGACACCGAAGGATTGTGTTCAGATACTTCCATCCTTCAATTACATAGTTGGTAACATTTATTCAGAGGTGTTCACACAGCCAATTTTATGTGGATGTGATTGTGCAGATGGATGTGTGGACCACAAGAAATGTGCTTGCAATGTTAAGAATGGTGGAAGAATGCCATATGATTGTAACAAAAGACTTGCGTCTCTCATGGAATCATCACTTATATATGAGTGTGGCCCTTCTTGCAGGTGTTCCTCATCTTGCACCAATCGAGTTAGTCAGCATGGTATTCAGTTCCAACTAGAAATCTTCATGACAAAATTGAAAGGTTGGGGTGTTAGAGCACGCTCATTCATCCCCTCCAGAAGCTTTGTATGTGCATACCTTGGGGAAGTCCGTAACAACAGACACTGTGAATCAAGACCAGATTTTGATGACTATATACTTAAGATTGGTGTCGGCAAGGGCTTCATTGATGCATCAAGATGCGGGAACATTGGAAGATTTATAAATCACAGTTGTTCTCCTAATCTCATTGTCAAGGATGTTACAAATGATCACAGTGATAAGAACCTTCCATATAAGGTGCTGTTTGCAGTTAAGGACATACCTGCTGGTAGAGAGCTGAGTTATGATTATAAGTCCTCCAAGAGAAATTATTTCAGGTTCGGAATAATATTTGCTACTGTAGATCACAGAATTGCAATAGTCTGA 1110 0.4108 MGKGLAKEHAAEAPEEIPLMGPFAGENPGSPVEGTSEDLGDAGPNPSNSGDGAGANTERGRSGKFVFKFILKRMLEQPQTCVALKGDVMDNAGNSGTFARITPNKRHKSRGCLVQKDVVRINDISEGKEKFPIRVVTPKDCVQILPSFNYIVGNIYSEVFTQPILCGCDCADGCVDHKKCACNVKNGGRMPYDCNKRLASLMESSLIYECGPSCRCSSSCTNRVSQHGIQFQLEIFMTKLKGWGVRARSFIPSRSFVCAYLGEVRNNRHCESRPDFDDYILKIGVGKGFIDASRCGNIGRFINHSCSPNLIVKDVTNDHSDKNLPYKVLFAVKDIPAGRELSYDYKSSKRNYFRFGIIFATVDHRIAIV 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01137 369 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 57 347 - -
Cca03g01137 369 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6 57 347 - -
Cca03g01137 369 SMART set_7 231 352 IPR001214 GO:0005515
Cca03g01137 369 SMART preset_2 121 215 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cca03g01137 369 ProSiteProfiles SET domain profile. 231 346 IPR001214 GO:0005515
Cca03g01137 369 ProSiteProfiles Pre-SET domain profile. 166 228 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cca03g01137 369 Pfam Pre-SET motif 124 223 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cca03g01137 369 MobiDBLite consensus disorder prediction 1 59 - -
Cca03g01137 369 Gene3D SET domain 99 354 IPR046341 -
Cca03g01137 369 SUPERFAMILY SET domain 113 347 IPR046341 -
Cca03g01137 369 Pfam SET domain 242 345 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01137 Cca-Chr3 27492956 27494324 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01137 57 345 EF-hand Containing Proteins AT5G13960 34.756 1.01e-40 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Cca03g01137 SET 1.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01137 - - ccaj:109810238 422.55